PDB entry 5ddq
View 5ddq on RCSB PDB site
Description: L-glutamine riboswitch bound with L-glutamine soaked with Mn2+
Class: RNA binding protein/RNA
Keywords: riboswitch, L-glutamine, bound-form, RNA, RNA BINDING PROTEIN-RNA complex
Deposited on
2015-08-25, released
2015-12-23
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-04-05, with a file datestamp of
2017-03-31.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.22
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: L-glutamine riboswitch RNA (61-MER)
Species: Synechococcus elongatus [TaxId:32046]
- Chain 'B':
Compound: L-glutamine riboswitch RNA (61-MER)
Species: Synechococcus elongatus [TaxId:32046]
- Chain 'C':
Compound: U1 small nuclear ribonucleoprotein A
Species: Homo sapiens [TaxId:9606]
Gene: SNRPA
Database cross-references and differences (RAF-indexed):
- Uniprot P09012
- engineered mutation (29)
- engineered mutation (34)
Domains in SCOPe 2.08: d5ddqc_ - Chain 'D':
Compound: U1 small nuclear ribonucleoprotein A
Species: Homo sapiens [TaxId:9606]
Gene: SNRPA
Database cross-references and differences (RAF-indexed):
- Uniprot P09012
- engineered mutation (29)
- engineered mutation (34)
Domains in SCOPe 2.08: d5ddqd_ - Heterogens: GLN, MN, MG, NA, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5ddqC (C:)
avpetrpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifke
vssatnalrsmqgfpfydkpmriqyaktdsdiiakmk
Sequence, based on observed residues (ATOM records): (download)
>5ddqC (C:)
petrpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifkevs
satnalrsmqgfpfydkpmriqyaktdsdiiakm
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5ddqD (D:)
avpetrpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifke
vssatnalrsmqgfpfydkpmriqyaktdsdiiakmk
Sequence, based on observed residues (ATOM records): (download)
>5ddqD (D:)
vpetrpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifkev
ssatnalrsmqgfpfydkpmriqyaktdsdiia