PDB entry 5d9f
View 5d9f on RCSB PDB site
Description: Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds
Class: Transferase/Transferase Inhibitor
Keywords: TrmD, Dimerization, tRNA Methyltransferases, S-adenosyl methionine, SAM-binding, Transferase-Transferase Inhibitor complex
Deposited on
2015-08-18, released
2016-08-31
The last revision prior to the SCOPe 2.08 freeze date was dated
2016-08-31, with a file datestamp of
2016-08-24.
Experiment type: XRAY
Resolution: 1.91 Å
R-factor: N/A
AEROSPACI score: 0.34
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: tRNA (guanine-N(1)-)-methyltransferase
Species: Haemophilus influenzae [TaxId:71421]
Gene: trmD, HI_0202
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5d9fa1, d5d9fa2 - Heterogens: 58G, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5d9fA (A:)
glvprgshmwigvislfpemfkaitefgvtgravkhnllkvecwnprdftfdkhktvddr
pygggpgmlmmvqplrdaihtakaaagegakviylspqgrkldqggvtelaqnqklilvc
gryegiderliqteideewsigdyvltggelpamtlidavarfipgvlgkqasaeedsfa
dglldcphytrpevlegltvppvlmsghheeirkwrlkqslqrtwlrrpelleglaltde
qrkllkeaqaehns
Sequence, based on observed residues (ATOM records): (download)
>5d9fA (A:)
gshmwigvislfpemfkaitefgvtgravkhnllkvecwnprdftfdkhktvddrpyggg
pgmlmmvqplrdaihtakaaagegakviylspqgrkldqggvtelaqnqklilvcgryeg
iderliqteideewsigdyvltggelpamtlidavarfipgvlgdglldcphytrpevle
gltvppvlmsghheeirkwrlkqslqrtwlrrpelleglaltdeqrkllkeaqaehn