PDB entry 5d9a

View 5d9a on RCSB PDB site
Description: Influenza C Virus RNA-dependent RNA Polymerase - Space group P212121
Class: viral protein
Keywords: RNA-dependent RNA polymerase, Influenza, Influenza C virus, Negative-strand virus, viral protein
Deposited on 2015-08-18, released 2015-10-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-07-10, with a file datestamp of 2019-07-05.
Experiment type: XRAY
Resolution: 4.3 Å
R-factor: N/A
AEROSPACI score: 0.03 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Polymerase acidic protein
    Species: Influenza C virus (strain C/Johannesburg/1/1966) [TaxId:100673]
    Gene: PA, P3
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5d9aa1, d5d9aa2, d5d9aa3
  • Chain 'B':
    Compound: RNA-directed RNA polymerase catalytic subunit
    Species: Influenza C virus (strain C/Johannesburg/1/1966) [TaxId:100673]
    Gene: Pb1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5d9ab_
  • Chain 'C':
    Compound: Polymerase basic protein 2
    Species: Influenza C virus (strain C/Johannesburg/1/1966) [TaxId:100673]
    Gene: pb2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5d9ac1, d5d9ac2, d5d9ac3, d5d9ac4, d5d9ac5, d5d9ac6
  • Chain 'D':
    Compound: Polymerase acidic protein
    Species: Influenza C virus (strain C/Johannesburg/1/1966) [TaxId:100673]
    Gene: PA, P3
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: RNA-directed RNA polymerase catalytic subunit
    Species: Influenza C virus (strain C/Johannesburg/1/1966) [TaxId:100673]
    Gene: Pb1
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Polymerase basic protein 2
    Species: Influenza C virus (strain C/Johannesburg/1/1966) [TaxId:100673]
    Gene: pb2
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Polymerase acidic protein
    Species: Influenza C virus (strain C/Johannesburg/1/1966) [TaxId:100673]
    Gene: PA, P3
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: RNA-directed RNA polymerase catalytic subunit
    Species: Influenza C virus (strain C/Johannesburg/1/1966) [TaxId:100673]
    Gene: Pb1
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Polymerase basic protein 2
    Species: Influenza C virus (strain C/Johannesburg/1/1966) [TaxId:100673]
    Gene: pb2
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Polymerase acidic protein
    Species: Influenza C virus (strain C/Johannesburg/1/1966) [TaxId:100673]
    Gene: PA, P3
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: RNA-directed RNA polymerase catalytic subunit
    Species: Influenza C virus (strain C/Johannesburg/1/1966) [TaxId:100673]
    Gene: Pb1
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: Polymerase basic protein 2
    Species: Influenza C virus (strain C/Johannesburg/1/1966) [TaxId:100673]
    Gene: pb2
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5d9aA (A:)
    msktfaeiaeaflepeavriakeaveeygdherkiiqigihfqvccmfcdeylstngsdr
    fvliegrkrgtavslqnelcksydleplpflcdifdreekqfveigitrkaddsyfqskf
    gklgnsckifvfsydgrldkncegpmeeqklrifsflataadflrkenmfneiflpdnee
    tiiemkkgktflelrdesvplpfqtyeqmkdycekfkgnprelaskvsqmqsniklpikh
    yeqnkfrqirlpkgpmapythkflmeeawmftkisdpersrageilidffkkgnlsairp
    kdkplqgkypihyknlwnqikaaiadrtmvinendhseflggigraskkipeisltqdvi
    tteglkqsenklpeprsfprwfnaewmwaikdsdltgwvpmaeyppadneledyaehlnk
    tmegvlqgtncaremgkciltvgalmtecrlfpgkikvvpiyarskerksmqeglpvpse
    mdclfgicvkskshlnkddgmytiitfefsirepnlekhqkytvfeaghttvrmkkgesv
    igrevplylycrttalskikndwlskarrcfittmdtveticlresakaeenlvektlne
    kqmwigkkngeliaqplrealrvqlvqqfyfciyndsqlegfcneqkkilmalegdkknk
    ssfgfnpegllekieeclinnpmclfmaqrlnelvieaskrgakffktd
    

    Sequence, based on observed residues (ATOM records): (download)
    >5d9aA (A:)
    tfaeiaeaflepeavriakeaveeygdherkiiqigihfqvccmfcdeylstngsdrfvl
    iegrkrgtavslqnelcksydleplpflcdifdreekqfveigitrkaddsyfqskfgkl
    gnsckifvfsydgrldkncegpmeeqklrifsflataadflrkenmfneiflpdneetii
    emkkgktflelrdesvplpfqtyeqmkdycekfkgnprelaskvsqmqsniklpikhyeq
    nkfrqirlpkgpmapythkflmeeawmftkisdpersrageilidffkkgnlsairpkdk
    plqgkypihyknlwnqikaaiadrtmvinendhseflggraskkipeisltqdvittegl
    kqsenklpeprsfprwfnaewmwaikdsdltgwvpmaeyppadneledyaehlnktmegv
    lqgtncaremgkciltvgalmtecrlfpgkikvvpiyarskerksmqeglpvpsemdclf
    gicvkskshdgmytiitfefsirepnlekhqkytvfeaghttvrmkkrevplylycrtta
    lskikndwlskarrcfittmdtveticlresakaeenlvektlnekqmwigkkngeliaq
    plrealrvqlvqqfyfciyndsqlegfcneqkkilmalegdkknkssfgfnpegllekie
    eclinnpmclfmaqrlnelvieaskrgakffkt
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5d9aB (B:)
    meinpylmflnndvtslisttypytgpppmshgsstkytletikrtydysrtsvektskv
    fniprrkfcncledkdelvkptgnvdissllglaemmekrmgegffkhcvmeaeteilkm
    hfsrltegrqtydwtsernmpaatalqltvdaiketegpfkgttmleycnkmiemldwke
    ikfkkvktvvrrekdkrsgkeiktkvpvmgidsikhdefliraltintmakdgergklqr
    raiatpgmivrpfskivetvaqkiceklkesglpvggnekkaklkttvtslnarmnsdqf
    avnitgdnskwnecqqpeaylallayitkdssdlmkdlcsvapvlfcnkfvklgqgirls
    nkrktkeviikaekmgkyknlmreeyknlfeplekyiqkdvcflpggmlmgmfnmlstvl
    gvstlcymdeelkakgcfwtglqssddfvlfavasnwsnihwtirrfnavckliginmsl
    eksygslpelfeftsmffdgefvsnlamelpafttagvnegvdftaamsiiktnminnsl
    spstalmalriclqefratyrvhpwdsrvkggrmkiinefiktienkdglliadggklmn
    nistlhipeevlkfekmdeqyrnrvfnpknpftnfdktidifrahgpirveeneavvsth
    sfrtranrtllntdmrammaeekryqmvcdmfksvfesadinppigamsigeaieeklle
    rakmkrdigaiedseyeeikdiirdakkarlesr
    

    Sequence, based on observed residues (ATOM records): (download)
    >5d9aB (B:)
    meinpylmflnndvtslisttypytgpppmshgsstkytletikrtydysrtsvektskv
    fniprrkfcncledkdelvkptgnvdissllglaemmekrmgegffkhcvmeaeteilkm
    hfsrltegrqtydwtsernmpaatalqltvdaiketegpfkgttmleycnkmiemldwke
    ikfkkvktvvvmgidsikhdefliraltintmakdgergklqrraiatpgmivrpfskiv
    etvaqkiceklkesglpvggnekkaklkttvtslnarmnsdqfavnitgdnskwnecqqp
    eaylallayitkdssdlmkdlcsvapvlfcnkfvklgqgirlsnkrktkeviikaekmgk
    yknlmreeyknlfeplekyiqkdvcflpggmlmgmfnmlstvlgvstlcyelkakgcfwt
    glqssddfvlfavasnwsnihwtirrfnavckliginmsleksygslpelfeftsmffdg
    efvsnlamelpafttagvnegvdftaamsiiktnminnslspstalmalriclqefraty
    rvhpwdsrvkggrmkiinefiktienkdglliadggklmnnistlhipeevlkfekmdeq
    yrnrvfnpknpfavvsthsfrtranrtllntdmrammaeekryqmvcdmfksvfesadin
    ppigamsigeaieekllerakmkrdigaiedseyeeikdiirdakkarles
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5d9aC (C:)
    msllltiakeykrlcqdakaaqmmtvgtvsnyttfkkwttsrkeknpslrmrwamsskfp
    iiankrmleeaqipkehnnvalwedtedvskrdhvlasascinywnfcgpcvnnsevike
    vyksrfgrlerrkeimwkelrftlvdrqrrrvdtqpveqrlrtgeikdlqmwtlfedeap
    laskfildnyglvkemrskfankplnkevvahmlekqfnpesrflpvfgairpermelih
    alggetwiqeantagisnvdqrkndiravcrkvclaanasimnaksklveyikstsmrig
    eterkleeliletddvspevtlcksalggqlgktlsfgpmllkkisgsgvkvkdtvyiqg
    vravqfeywseqeefygeyksatalfsrkerslewitiggginedrkrllamcmifcrdg
    dyfkdapatitmadlstklgreipyqyvmmnwiqksednleallysrgivetnpgkmgss
    mgidgskraikslravtiqsgkidmpeskekihlelsdnleafdssgrivatildlpsdk
    kvtfqdvsfqhpdlavlrdektaitkgyealikrlgtgdndipsliakkdylslynlpev
    klmaplirpnrkgvysrvarklvstqvttghyslhelikvlpftyfapkqgmfegrlffs
    ndsfvepgvnnnvfswskadsskiychgiairvplvvgdehmdtslallegfsvcendpr
    apmvtrqdlidvgfgqkvrlfvgqgsvrtfkrtasqraassdvnknvkkikmsnarenly
    fq
    

    Sequence, based on observed residues (ATOM records): (download)
    >5d9aC (C:)
    msllltiakeykrlcqdakaaqmmtvgtvsnyttfkkwttsrkeknpslrmrwamsskfp
    iiankrmleeaqipkehnnvalwedtekrdhvlasascinywnfcgpcvnnsevikevyk
    srfgrlerrkeimwkelrftlvdrqrrrvdtqpveqrlrtgeikdlqmwtlfedeaplas
    kfildnyglvkemrskfankplnkevvahmlekqfnpesrflpvfgairpermelihalg
    getwiqeantagisnvdqrkndiravcrkvclaanasimnaksklveyikstsmrigete
    rkleeliletddvspevtlcksalggqlgktlsfgpmllkkisgsgvkvkdtvyiqfeyw
    seqeefygeyksatalfsrkerslewitiggginedrkrllamcmifcrdgdyfkdapat
    itmadlstklgreipyqyvmmnwiqksednleallysrgivetnpgkmgssmgidgskra
    ikslravtiqsgkidmpeskekihlelsdnleafdssgrivatildlpsdkkvtfqdvsf
    qhpdlavlrdektaitkgyealikrlgtgdndipsliakkdylslynlpevklmaplirp
    nrkgvysrvarklvstqvttghyslhelikvlpftyfarlffsndsfvepgvnnnvfsws
    kadsskiychgiairvplvvgdehmdtslallegfsvcendprapmvtrqdlidvgfgqk
    vrlfvgqgsvrtfkrtasqraassdvnknvkkik
    

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.