PDB entry 5d6w
View 5d6w on RCSB PDB site
Description: Crystal structure of double tudor domain of human lysine demethylase KDM4A
Class: oxidoreductase
Keywords: double tudor domain, reader domain, Structural Genomics, PSI-2, Protein Structure Initiative, Enzyme Discovery for Natural Product Biosynthesis, NatPro, OXIDOREDUCTASE
Deposited on
2015-08-13, released
2015-11-25
The last revision prior to the SCOPe 2.08 freeze date was dated
2019-12-25, with a file datestamp of
2019-12-20.
Experiment type: XRAY
Resolution: 1.99 Å
R-factor: N/A
AEROSPACI score: 0.32
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: lysine-specific demethylase 4a
Species: Homo sapiens [TaxId:9606]
Gene: KDM4A, JHDM3A, JMJD2, JMJD2A, KIAA0677
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5d6wa1, d5d6wa2 - Chain 'B':
Compound: lysine-specific demethylase 4a
Species: Homo sapiens [TaxId:9606]
Gene: KDM4A, JHDM3A, JMJD2, JMJD2A, KIAA0677
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5d6wb1, d5d6wb2 - Chain 'C':
Compound: lysine-specific demethylase 4a
Species: Homo sapiens [TaxId:9606]
Gene: KDM4A, JHDM3A, JMJD2, JMJD2A, KIAA0677
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5d6wc1, d5d6wc2 - Chain 'D':
Compound: lysine-specific demethylase 4a
Species: Homo sapiens [TaxId:9606]
Gene: KDM4A, JHDM3A, JMJD2, JMJD2A, KIAA0677
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5d6wd1, d5d6wd2 - Heterogens: SRT, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5d6wA (A:)
gshmalqsitagqkviskhkngrfyqcevvrlttetfyevnfddgsfsdnlypedivsqd
clqfgppaegevvqvrwtdgqvygakfvashpiqmyqvefedgsqlvvkrddvytldeel
p
Sequence, based on observed residues (ATOM records): (download)
>5d6wA (A:)
qsitagqkviskhkngrfyqcevvrlttetfyevnfddgsfsdnlypedivsqdclqfgp
paegevvqvrwtdgqvygakfvashpiqmyqvefedgsqlvvkrddvytldeelp
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5d6wB (B:)
gshmalqsitagqkviskhkngrfyqcevvrlttetfyevnfddgsfsdnlypedivsqd
clqfgppaegevvqvrwtdgqvygakfvashpiqmyqvefedgsqlvvkrddvytldeel
p
Sequence, based on observed residues (ATOM records): (download)
>5d6wB (B:)
qsitagqkviskhkngrfyqcevvrlttetfyevnfddgsfsdnlypedivsqdclqfgp
paegevvqvrwtdgqvygakfvashpiqmyqvefedgsqlvvkrddvytldeelp
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5d6wC (C:)
gshmalqsitagqkviskhkngrfyqcevvrlttetfyevnfddgsfsdnlypedivsqd
clqfgppaegevvqvrwtdgqvygakfvashpiqmyqvefedgsqlvvkrddvytldeel
p
Sequence, based on observed residues (ATOM records): (download)
>5d6wC (C:)
qsitagqkviskhkngrfyqcevvrlttetfyevnfddgsfsdnlypedivsqdclqfgp
paegevvqvrwtdgqvygakfvashpiqmyqvefedgsqlvvkrddvytldeelp
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5d6wD (D:)
gshmalqsitagqkviskhkngrfyqcevvrlttetfyevnfddgsfsdnlypedivsqd
clqfgppaegevvqvrwtdgqvygakfvashpiqmyqvefedgsqlvvkrddvytldeel
p
Sequence, based on observed residues (ATOM records): (download)
>5d6wD (D:)
qsitagqkviskhkngrfyqcevvrlttetfyevnfddgsfsdnlypedivsqdclqfgp
paegevvqvrwtdgqvygakfvashpiqmyqvefedgsqlvvkrddvytldeelp