PDB entry 5d67

View 5d67 on RCSB PDB site
Description: Crystal structure of an EF-Hand calcium binding domain of CAP-Binding Protein Complex-Interacting Protein 1 (EFCAB6) from Homo sapiens at 2.00 A resolution
Class: metal binding protein
Keywords: Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, METAL BINDING PROTEIN, Partnership for Nuclear Receptor Signaling Code Biology, NHRS
Deposited on 2015-08-11, released 2015-09-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-01-24, with a file datestamp of 2018-01-19.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: EF-hand calcium-binding domain-containing protein 6
    Species: Homo sapiens [TaxId:9606]
    Gene: EFCAB6, DJBP, KIAA1672
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5THR3 (1-End)
      • leader sequence (0)
      • engineered mutation (59)
    Domains in SCOPe 2.08: d5d67a1, d5d67a2
  • Chain 'B':
    Compound: EF-hand calcium-binding domain-containing protein 6
    Species: Homo sapiens [TaxId:9606]
    Gene: EFCAB6, DJBP, KIAA1672
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5THR3 (1-End)
      • leader sequence (0)
      • engineered mutation (59)
    Domains in SCOPe 2.08: d5d67b1, d5d67b2
  • Chain 'C':
    Compound: EF-hand calcium-binding domain-containing protein 6
    Species: Homo sapiens [TaxId:9606]
    Gene: EFCAB6, DJBP, KIAA1672
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5THR3 (1-End)
      • leader sequence (0)
      • engineered mutation (59)
    Domains in SCOPe 2.08: d5d67c1, d5d67c2
  • Chain 'D':
    Compound: EF-hand calcium-binding domain-containing protein 6
    Species: Homo sapiens [TaxId:9606]
    Gene: EFCAB6, DJBP, KIAA1672
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5THR3
      • engineered mutation (59)
    Domains in SCOPe 2.08: d5d67d_
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5d67A (A:)
gatadrdilarlhkavtshyhaitqefenfdtmktntisreefraicnrrvqiltdeqfg
rlwnempvnakgrlkypdflsrfssetaatpmatgdsavaqr

    Sequence, based on observed residues (ATOM records): (download) 
    >5d67A (A:)
gatadrdilarlhkavtshyhaitqefenfdtmktntisreefraicnrrvqiltdeqfg
rlwnempvnakgrlkypdflsrfsse

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5d67B (B:)
gatadrdilarlhkavtshyhaitqefenfdtmktntisreefraicnrrvqiltdeqfg
rlwnempvnakgrlkypdflsrfssetaatpmatgdsavaqr

    Sequence, based on observed residues (ATOM records): (download) 
    >5d67B (B:)
gatadrdilarlhkavtshyhaitqefenfdtmktntisreefraicnrrvqiltdeqfg
rlwnempvnakgrlkypdflsrfss

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5d67C (C:)
gatadrdilarlhkavtshyhaitqefenfdtmktntisreefraicnrrvqiltdeqfg
rlwnempvnakgrlkypdflsrfssetaatpmatgdsavaqr

    Sequence, based on observed residues (ATOM records): (download) 
    >5d67C (C:)
gatadrdilarlhkavtshyhaitqefenfdtmktntisreefraicnrrvqiltdeqfg
rlwnempvnakgrlkypdflsrfss

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5d67D (D:)
gatadrdilarlhkavtshyhaitqefenfdtmktntisreefraicnrrvqiltdeqfg
rlwnempvnakgrlkypdflsrfssetaatpmatgdsavaqr

    Sequence, based on observed residues (ATOM records): (download) 
    >5d67D (D:)
adrdilarlhkavtshyhaitqefenfdtmktntisreefraicnrrvqiltdeqfgrlw
nempvnakgrlkypdflsrfssetaatpmatgdsa