PDB entry 5d1m

View 5d1m on RCSB PDB site
Description: Crystal Structure of UbcH5B in Complex with the RING-U5BR Fragment of AO7 (P199A)
Class: ligase
Keywords: ubiquitin conjugating enzyme (E2), ubiquitin ligase (E3), RING finger, ubiquitination, ubiquitin, LIGASE
Deposited on 2013-10-08, released 2015-10-28
The last revision prior to the SCOPe 2.06 freeze date was dated 2015-12-30, with a file datestamp of 2015-12-24.
Experiment type: XRAY
Resolution: 1.58 Å
R-factor: N/A
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ubiquitin-conjugating enzyme e2 d2
    Species: Homo sapiens [TaxId:9606]
    Gene: UBE2D2, PUBC1, UBC4, UBC5B, UBCH4, UBCH5B
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5d1ma_
  • Chain 'B':
    Compound: E3 ubiquitin-protein ligase RNF25
    Species: Homo sapiens [TaxId:9606]
    Gene: RNF25
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q96BH1
      • enginereed mutation (73)
  • Heterogens: OXL, PEG, ZN, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5d1mA (A:)
    malkrihkelndlardppaqcsagpvgddmfhwqatimgpndspyqggvffltihfptdy
    pfkppkvafttriyhpninsngsicldilrsqwspaltiskvllsicsllcdpnpddplv
    peiariyktdrekynriarewtqkyam
    

    Sequence, based on observed residues (ATOM records): (download)
    >5d1mA (A:)
    alkrihkelndlardppaqcsagpvgddmfhwqatimgpndspyqggvffltihfptdyp
    fkppkvafttriyhpninsngsicldilrsqwspaltiskvllsicsllcdpnpddplvp
    eiariyktdrekynriarewtqkyam
    

  • Chain 'B':
    No sequence available.