PDB entry 5d1k
View 5d1k on RCSB PDB site
Description: Crystal Structure of UbcH5B in Complex with the RING-U5BR Fragment of AO7
Class: Ligase
Keywords: ubiquitin conjugating enzyme (E2), ubiquitin ligase (E3), RING finger, ubiquitination, ubiquitin, Ligase
Deposited on
2013-10-08, released
2015-10-28
The last revision prior to the SCOPe 2.05 freeze date was dated
2015-10-28, with a file datestamp of
2015-10-23.
Experiment type: XRAY
Resolution: 1.78 Å
R-factor: N/A
AEROSPACI score: 0.39
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: ubiquitin-conjugating enzyme e2 d2
Species: Homo sapiens [TaxId:9606]
Gene: UBE2D2, PUBC1, UBC4, UBC5B, UBCH4, UBCH5B
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d5d1ka_ - Chain 'B':
Compound: E3 ubiquitin-protein ligase RNF25
Species: Homo sapiens [TaxId:9606]
Gene: RNF25
Database cross-references and differences (RAF-indexed):
- Heterogens: EDO, PEG, OXL, ZN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5d1kA (A:)
malkrihkelndlardppaqcsagpvgddmfhwqatimgpndspyqggvffltihfptdy
pfkppkvafttriyhpninsngsicldilrsqwspaltiskvllsicsllcdpnpddplv
peiariyktdrekynriarewtqkyam
Sequence, based on observed residues (ATOM records): (download)
>5d1kA (A:)
alkrihkelndlardppaqcsagpvgddmfhwqatimgpndspyqggvffltihfptdyp
fkppkvafttriyhpninsngsicldilrsqwspaltiskvllsicsllcdpnpddplvp
eiariyktdrekynriarewtqkyam
- Chain 'B':
No sequence available.