PDB entry 5cfd

View 5cfd on RCSB PDB site
Description: Crystal Structure of DTT treated Human Cardiovirus SAFV-3
Class: virus
Keywords: Virion, capsid, DTT, saffold virus, pathogen, virus
Deposited on 2015-07-08, released 2016-06-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-04-11, with a file datestamp of 2018-04-06.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vp1
    Species: SAFFOLD VIRUS [TaxId:434309]
    Database cross-references and differences (RAF-indexed):
    • Uniprot C0MHL9 (0-251)
      • conflict (35)
    Domains in SCOPe 2.08: d5cfda_
  • Chain 'B':
    Compound: vp3
    Species: SAFFOLD VIRUS [TaxId:434309]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5cfdb_
  • Chain 'C':
    Compound: vp2
    Species: SAFFOLD VIRUS [TaxId:434309]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: vp4
    Species: SAFFOLD VIRUS [TaxId:434309]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5cfdA (A:)
gvdnaekgkvsddnastdfvaepvklpenqtrvsffydrstlssvlqstsdvsskftpst
aknlqnsilltplpsdivnnsvlpeqerwisfaspttqkppyktkqdwnfimfspftyyk
cdlevtlskndretissvvryvpcgapsdlsdqtmpqtpsladtrdphmwvvgqgttnqi
sfvipytsplsvlpsvwfngfsnfdnssrfgvapnadfgrlllqgqgtfsvhyrykkmrv
fcprptvfipwp

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5cfdB (B:)
spfpvtvrehagtffsttpdttvpvygntistpfdymcgeftdllslckiptflgnldsn
kkripyfsatnstpatplvtyqvtlscscmansmlaavarnfnqyrgslnylfvftgsam
tkgkflisytppgagepktldqamqatyaiwdlglnssynftvpfispthyrqtsyntpt
itsvdgwltvwqltpltyplgvpndshiltlvsggddftlrmpvtftkyvpq

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.