PDB entry 5ccj

View 5ccj on RCSB PDB site
Description: Crystal structure of the quintuple mutant of the synaptotagmin-1 C2B domain
Class: signaling protein
Keywords: Synaptotagmin1, C2B domain, SIGNALING PROTEIN
Deposited on 2015-07-02, released 2015-08-12
The last revision prior to the SCOPe 2.08 freeze date was dated 2015-09-16, with a file datestamp of 2015-09-11.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: N/A
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Synaptotagmin-1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Syt1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P21707 (1-End)
      • engineered mutation (11)
      • engineered mutation (25)
      • engineered mutation (68)
      • engineered mutation (128-129)
    Domains in SCOPe 2.08: d5ccja_
  • Chain 'B':
    Compound: Synaptotagmin-1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Syt1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P21707 (1-151)
      • engineered mutation (11)
      • engineered mutation (25)
      • engineered mutation (68)
      • engineered mutation (128-129)
    Domains in SCOPe 2.08: d5ccjb_
  • Chain 'C':
    Compound: Synaptotagmin-1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Syt1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P21707 (1-End)
      • engineered mutation (11)
      • engineered mutation (25)
      • engineered mutation (68)
      • engineered mutation (128-129)
    Domains in SCOPe 2.08: d5ccjc_
  • Chain 'D':
    Compound: Synaptotagmin-1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Syt1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P21707 (1-151)
      • expression tag (0)
      • engineered mutation (11)
      • engineered mutation (25)
      • engineered mutation (68)
      • engineered mutation (128-129)
    Domains in SCOPe 2.08: d5ccjd1, d5ccjd2
  • Heterogens: GOL, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5ccjA (A:)
    seklgdicfslayvptagkltvvilaaknlkkmdvgglsdpyvkihlmqngkrlkkkktt
    ikkntlnpwynesfsfevpfeqiqkvqvvvtvldydkigkndaigkvfvgynstgaelrh
    wsdmlanpaapiaqwhtlqveeevdamlavkk
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ccjA (A:)
    eklgdicfslayvptagkltvvilaaknlkkmdvgglsdpyvkihlmqngkrlkkkktti
    kkntlnpwynesfsfevpfeqiqkvqvvvtvldydkigkndaigkvfvgynstgaelrhw
    sdmlanpaapiaqwhtlqveeevdamla
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5ccjB (B:)
    seklgdicfslayvptagkltvvilaaknlkkmdvgglsdpyvkihlmqngkrlkkkktt
    ikkntlnpwynesfsfevpfeqiqkvqvvvtvldydkigkndaigkvfvgynstgaelrh
    wsdmlanpaapiaqwhtlqveeevdamlavkk
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ccjB (B:)
    eklgdicfslayvptagkltvvilaaknlkkmdvgglsdpyvkihlmqngkrlkkkktti
    kkntlnpwynesfsfevpfeqiqkvqvvvtvldydkigkndaigkvfvgynstgaelrhw
    sdmlanpaapiaqwhtlqveeevdamlavkk
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5ccjC (C:)
    seklgdicfslayvptagkltvvilaaknlkkmdvgglsdpyvkihlmqngkrlkkkktt
    ikkntlnpwynesfsfevpfeqiqkvqvvvtvldydkigkndaigkvfvgynstgaelrh
    wsdmlanpaapiaqwhtlqveeevdamlavkk
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ccjC (C:)
    eklgdicfslayvptagkltvvilaaknlkkmdvgglsdpyvkihlmqngkrlkkkktti
    kkntlnpwynesfsfevpfeqiqkvqvvvtvldydkigkndaigkvfvgynstgaelrhw
    sdmlanpaapiaqwhtlqveeevdamla
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5ccjD (D:)
    seklgdicfslayvptagkltvvilaaknlkkmdvgglsdpyvkihlmqngkrlkkkktt
    ikkntlnpwynesfsfevpfeqiqkvqvvvtvldydkigkndaigkvfvgynstgaelrh
    wsdmlanpaapiaqwhtlqveeevdamlavkk