PDB entry 5cc2

View 5cc2 on RCSB PDB site
Description: structure of the ligand-binding domain of the ionotropic glutamate receptor-like glud2 in complex with 7-cka
Class: signaling protein
Keywords: Ionotropic glutamate receptor, GluD2, ligand binding domain, NMDA receptor antagonist, signaling protein
Deposited on 2015-07-01, released 2015-12-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-01-17, with a file datestamp of 2018-01-12.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glutamate receptor ionotropic, delta-2
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grid2
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q63226 (Start-112)
      • linker (113-114)
    • Uniprot Q63226 (115-End)
    Domains in SCOPe 2.08: d5cc2a_
  • Heterogens: CKA, GOL, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5cc2A (A:)
    ggvvlrvvtvleepfvmvsenvlgkpkkyqgfsidvldalsnylgfnyeiyvapdhkygs
    pqedgtwnglvgelvfkradigisaltitpdrenvvdfttrymdysvgvllrrgtsiqsl
    qdlskqtdipygtvldsavyqhvrmkglnpferdsmysqmwrminrsngsennvlesqag
    iqkvkygnyafvwdaavleyvaindpdcsfytvgntvadrgygialqhgspyrdvfsqri
    lelqqsgdmdilkhkwwpkngqcdl
    

    Sequence, based on observed residues (ATOM records): (download)
    >5cc2A (A:)
    vvlrvvtvleepfvmvsenvlgkpkkyqgfsidvldalsnylgfnyeiyvapdhkygspq
    edgtwnglvgelvfkradigisaltitpdrenvvdfttrymdysvgvllrrgtsiqslqd
    lskqtdipygtvldsavyqhvrmkglnpferdsmysqmwrminrsngsennvlesqagiq
    kvkygnyafvwdaavleyvaindpdcsfytvgntvadrgygialqhgspyrdvfsqrile
    lqqsgdmdilkhkwwp