PDB entry 5cba
View 5cba on RCSB PDB site
Description: 3B4 in complex with CXCL13 - 3B4-CXCL13
Class: immune system
Keywords: anti-CXCL13, CXCL13, scFv, IMMUNE SYSTEM
Deposited on
2015-06-30, released
2015-11-04
The last revision prior to the SCOPe 2.08 freeze date was dated
2018-11-14, with a file datestamp of
2018-11-09.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.2
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: 3b4 heavy chain
Species: Homo sapiens [TaxId:9606]
Gene: IGHV1-69-2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5cbaa_ - Chain 'B':
Compound: 3B4 light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P04209 (0-91)
- conflict (11)
- conflict (25)
- conflict (30)
- conflict (33)
- conflict (50)
- conflict (54)
- conflict (59)
- conflict (61)
- PDB 5CBA (92-End)
Domains in SCOPe 2.08: d5cbab1, d5cbab2 - Chain 'C':
Compound: 3b4 heavy chain
Species: Homo sapiens [TaxId:9606]
Gene: IGHV1-69-2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5cbac_ - Chain 'D':
Compound: 3B4 light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P04209 (0-91)
- conflict (11)
- conflict (25)
- conflict (30)
- conflict (33)
- conflict (50)
- conflict (54)
- conflict (59)
- conflict (61)
- PDB 5CBA (92-End)
Domains in SCOPe 2.08: d5cbad1, d5cbad2 - Chain 'E':
Compound: C-X-C motif chemokine 13
Species: Homo sapiens [TaxId:9606]
Gene: CXCL13, BCA1, BLC, SCYB13
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5cbae_ - Chain 'F':
Compound: C-X-C motif chemokine 13
Species: Homo sapiens [TaxId:9606]
Gene: CXCL13, BCA1, BLC, SCYB13
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5cbaf_ - Heterogens: EDO, PEG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5cbaA (A:)
qvqlvqsgaevkkpgssvkvsckasggtfssyaiswvrqapgqglewmggiipifgtany
aqkfqgrvtitadeststaymelsslrsedtavyycarepdyydssgyypidafdiwgqg
ttvtvssggggsggggsggggs
Sequence, based on observed residues (ATOM records): (download)
>5cbaA (A:)
qvqlvqsgaevkkpgssvkvsckasggtfssyaiswvrqapgqglewmggiipifgtany
aqkfqgrvtitadeststaymelsslrsedtavyycarepdyydssgyypidafdiwgqg
ttvtvss
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5cbaB (B:)
qsaltqpasvsaspgqsitisctgtssdvgaydwvswyqqhpgkapkllifdvnnrpsgv
shrfsgsksgntasltisglqaedeadyycssytrrdtyvfgtgtkvtvlgenlyfq
Sequence, based on observed residues (ATOM records): (download)
>5cbaB (B:)
qsaltqpasvsaspgqsitisctgtssdvgaydwvswyqqhpgkapkllifdvnnrpsgv
shrfsgsksgntasltisglqaedeadyycssytrrdtyvfgtgtkvtvlge
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5cbaC (C:)
qvqlvqsgaevkkpgssvkvsckasggtfssyaiswvrqapgqglewmggiipifgtany
aqkfqgrvtitadeststaymelsslrsedtavyycarepdyydssgyypidafdiwgqg
ttvtvssggggsggggsggggs
Sequence, based on observed residues (ATOM records): (download)
>5cbaC (C:)
qvqlvqsgaevkkpgssvkvsckasggtfssyaiswvrqapgqglewmggiipifgtany
aqkfqgrvtitadeststaymelsslrsedtavyycarepdyydssgyypidafdiwgqg
ttvtvss
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5cbaD (D:)
qsaltqpasvsaspgqsitisctgtssdvgaydwvswyqqhpgkapkllifdvnnrpsgv
shrfsgsksgntasltisglqaedeadyycssytrrdtyvfgtgtkvtvlgenlyfq
Sequence, based on observed residues (ATOM records): (download)
>5cbaD (D:)
qsaltqpasvsaspgqsitisctgtssdvgaydwvswyqqhpgkapkllifdvnnrpsgv
shrfsgsksgntasltisglqaedeadyycssytrrdtyvfgtgtkvtvlg
- Chain 'E':
Sequence, based on SEQRES records: (download)
>5cbaE (E:)
mvlevyytslrcrcvqessvfiprrfidriqilprgngcprkeiivwkknksivcvdpqa
ewiqrmmevlrkrssstlpvpvfkrkip
Sequence, based on observed residues (ATOM records): (download)
>5cbaE (E:)
rcrcvqessvfiprrfidriqilprgngcprkeiivwkknksivcvdpqaewiqrmmevl
r
- Chain 'F':
Sequence, based on SEQRES records: (download)
>5cbaF (F:)
mvlevyytslrcrcvqessvfiprrfidriqilprgngcprkeiivwkknksivcvdpqa
ewiqrmmevlrkrssstlpvpvfkrkip
Sequence, based on observed residues (ATOM records): (download)
>5cbaF (F:)
slrcrcvqessvfiprrfidriqilprgngcprkeiivwkknksivcvdpqaewiqrmme
vlrk