SCOPe 2.06: Structural Classification of Proteins

PDB entry 5cb5

View 5cb5 on RCSB PDB site
Description: Structural Insights into the Mechanism of Escherichia coli Ymdb
Class: hydrolase
Keywords: deacetylase, ADPr, OAADPr, macro domain, HYDROLASE
Deposited on 2015-06-30, released 2015-11-04
The last revision prior to the SCOPe 2.06 freeze date was dated 2015-12-02, with a file datestamp of 2015-11-27.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: O-acetyl-ADP-ribose deacetylase
Species: Escherichia coli K12 [TaxId:83333]
Gene: ymdB
Database cross-references and differences (RAF-indexed):
- Uniprot P0A8D6
  - engineered mutation (30)
  - engineered mutation (40)
Domains in SCOPe 2.06: d5cb5a_
Chain 'B':
Compound: O-acetyl-ADP-ribose deacetylase
Species: Escherichia coli K12 [TaxId:83333]
Gene: ymdB
Database cross-references and differences (RAF-indexed):
- Uniprot P0A8D6
  - engineered mutation (30)
  - engineered mutation (40)
Domains in SCOPe 2.06: d5cb5b_
Chain 'C':
Compound: O-acetyl-ADP-ribose deacetylase
Species: Escherichia coli K12 [TaxId:83333]
Gene: ymdB
Database cross-references and differences (RAF-indexed):
- Uniprot P0A8D6
  - engineered mutation (30)
  - engineered mutation (40)
Domains in SCOPe 2.06: d5cb5c_
Chain 'D':
Compound: O-acetyl-ADP-ribose deacetylase
Species: Escherichia coli K12 [TaxId:83333]
Gene: ymdB
Database cross-references and differences (RAF-indexed):
- Uniprot P0A8D6
  - engineered mutation (30)
  - engineered mutation (40)
Domains in SCOPe 2.06: d5cb5d_
Chain 'E':
Compound: O-acetyl-ADP-ribose deacetylase
Species: Escherichia coli K12 [TaxId:83333]
Gene: ymdB
Database cross-references and differences (RAF-indexed):
- Uniprot P0A8D6
  - engineered mutation (30)
  - engineered mutation (40)
Domains in SCOPe 2.06: d5cb5e_
Chain 'F':
Compound: O-acetyl-ADP-ribose deacetylase
Species: Escherichia coli K12 [TaxId:83333]
Gene: ymdB
Database cross-references and differences (RAF-indexed):
- Uniprot P0A8D6
  - engineered mutation (30)
  - engineered mutation (40)
Domains in SCOPe 2.06: d5cb5f_
Chain 'G':
Compound: O-acetyl-ADP-ribose deacetylase
Species: Escherichia coli K12 [TaxId:83333]
Gene: ymdB
Database cross-references and differences (RAF-indexed):
- Uniprot P0A8D6
  - engineered mutation (30)
  - engineered mutation (40)
Domains in SCOPe 2.06: d5cb5g_
Chain 'H':
Compound: O-acetyl-ADP-ribose deacetylase
Species: Escherichia coli K12 [TaxId:83333]
Gene: ymdB
Database cross-references and differences (RAF-indexed):
- Uniprot P0A8D6
  - engineered mutation (30)
  - engineered mutation (40)
Domains in SCOPe 2.06: d5cb5h_
Chain 'I':
Compound: O-acetyl-ADP-ribose deacetylase
Species: Escherichia coli K12 [TaxId:83333]
Gene: ymdB
Database cross-references and differences (RAF-indexed):
- Uniprot P0A8D6
  - engineered mutation (30)
  - engineered mutation (40)
Domains in SCOPe 2.06: d5cb5i_
Chain 'J':
Compound: O-acetyl-ADP-ribose deacetylase
Species: Escherichia coli K12 [TaxId:83333]
Gene: ymdB
Database cross-references and differences (RAF-indexed):
- Uniprot P0A8D6
  - engineered mutation (30)
  - engineered mutation (40)
Domains in SCOPe 2.06: d5cb5j_
Chain 'K':
Compound: O-acetyl-ADP-ribose deacetylase
Species: Escherichia coli K12 [TaxId:83333]
Gene: ymdB
Database cross-references and differences (RAF-indexed):
- Uniprot P0A8D6
  - engineered mutation (30)
  - engineered mutation (40)
Domains in SCOPe 2.06: d5cb5k_
Chain 'L':
Compound: O-acetyl-ADP-ribose deacetylase
Species: Escherichia coli K12 [TaxId:83333]
Gene: ymdB
Database cross-references and differences (RAF-indexed):
- Uniprot P0A8D6
  - engineered mutation (30)
  - engineered mutation (40)
Domains in SCOPe 2.06: d5cb5l_
Chain 'M':
Compound: O-acetyl-ADP-ribose deacetylase
Species: Escherichia coli K12 [TaxId:83333]
Gene: ymdB
Database cross-references and differences (RAF-indexed):
- Uniprot P0A8D6
  - engineered mutation (30)
  - engineered mutation (40)
Domains in SCOPe 2.06: d5cb5m_
Chain 'N':
Compound: O-acetyl-ADP-ribose deacetylase
Species: Escherichia coli K12 [TaxId:83333]
Gene: ymdB
Database cross-references and differences (RAF-indexed):
- Uniprot P0A8D6
  - engineered mutation (30)
  - engineered mutation (40)
Domains in SCOPe 2.06: d5cb5n_
Chain 'O':
Compound: O-acetyl-ADP-ribose deacetylase
Species: Escherichia coli K12 [TaxId:83333]
Gene: ymdB
Database cross-references and differences (RAF-indexed):
- Uniprot P0A8D6
  - engineered mutation (30)
  - engineered mutation (40)
Domains in SCOPe 2.06: d5cb5o_
Chain 'P':
Compound: O-acetyl-ADP-ribose deacetylase
Species: Escherichia coli K12 [TaxId:83333]
Gene: ymdB
Database cross-references and differences (RAF-indexed):
- Uniprot P0A8D6
  - engineered mutation (30)
  - engineered mutation (40)
Domains in SCOPe 2.06: d5cb5p_
Chain 'Q':
Compound: O-acetyl-ADP-ribose deacetylase
Species: Escherichia coli K12 [TaxId:83333]
Gene: ymdB
Database cross-references and differences (RAF-indexed):
- Uniprot P0A8D6
  - engineered mutation (30)
  - engineered mutation (40)
Domains in SCOPe 2.06: d5cb5q_
Chain 'R':
Compound: O-acetyl-ADP-ribose deacetylase
Species: Escherichia coli K12 [TaxId:83333]
Gene: ymdB
Database cross-references and differences (RAF-indexed):
- Uniprot P0A8D6
  - engineered mutation (30)
  - engineered mutation (40)
Domains in SCOPe 2.06: d5cb5r_
Heterogens: APR, SO4, ACT, ZOD, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>5cb5A (A:)
hhhhhhmktrihvvqgditklavdvivnaaapslmggggvagaihraagpalldaclkvr
qqqgdcptghavitlagdlpakavvhtvgpvwrggeqnedqllqdaylnslrlvaansyt
svafpaistgvygypraaaaeiavktvsefitrhalpeqvyfvcydeenahlyerlltqq
gde