PDB entry 5c8c

View 5c8c on RCSB PDB site
Description: Crystal structure of recombinant coxsackievirus A16 capsid
Class: virus
Keywords: hand-foot-and-mouth disease, immunogenicity, picornavirus, icosahedral virus, virus
Deposited on 2015-06-25, released 2015-09-30
The last revision prior to the SCOPe 2.07 freeze date was dated 2015-10-07, with a file datestamp of 2015-10-02.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vp1
    Species: Coxsackievirus A16 (strain Tainan/5079/98) [TaxId:231417]
    Database cross-references and differences (RAF-indexed):
    • Uniprot I3W9E1 (0-296)
      • conflict (239)
    Domains in SCOPe 2.07: d5c8ca_
  • Chain 'B':
    Compound: vp0
    Species: Coxsackievirus A16 (strain Tainan/5079/98) [TaxId:231417]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: vp3
    Species: Coxsackievirus A16 (strain Tainan/5079/98) [TaxId:231417]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5c8cc_
  • Heterogens: STE, CL, K, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5c8cA (A:)
gdpiadmidqtvnnqvnrsltalqvlptaanteasshrlgtgvvpalqaaetgassnasd
knlietrcvlnhhstqetaignffsraglvsiitmpttgtqntdgyvnwdidlmgyaqlr
rkcelftymrfdaeftfvvakpngelvpqllqymyvppgapkptsrdsfawqtatnpsvf
vkmtdppaqvsvpfmspasayqwfydgyptfgehlqandldygqcpnnmmgtfsirtvgt
eksphsitlrvymrikhvrawiprplrnqpylfktnpnykgndikctstsrdkittl

    Sequence, based on observed residues (ATOM records): (download) 
    >5c8cA (A:)
gdpiadmlqvlptaanteassdknlietrcvlnhhstqetaignffsraglvsiitmptt
gtqntdgyvnwdidlmgyaqlrrkcelftymrfdaeftfvvakpngelvpqllqymyvpp
gapkptsrdsfawqtatnpsvfvkmtdppaqvsvpfmspasayqwfydgyptfgehlqan
dldygqcpnnmmgtfsirtvgteksphsitlrvymrikhvrawiprplrnqpylfktnpn
ykgndikctstsrdkittl

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5c8cC (C:)
giptelkpgtnqflttddgvsapilpgfhptppihipgevhnlleicrvetilevnnlkt
nettpmqrlcfpvsvqsktgelcaafradpgrdgpwqstilgqlcryytqwsgslevtfm
fagsfmatgkmliaytppggnvpadritamlgthviwdfglqssvtlvvpwisnthyrah
aragyfdyyttgiitiwyqtnyvvpigapttayivalaaaqdnftmklckdtedieqtan
iq