PDB entry 5c54

View 5c54 on RCSB PDB site
Description: Crystal structure of a novel N-acetylneuraminic acid lyase from Corynebacterium glutamicum
Class: lyase
Keywords: N-acetylneuraminic acid lyase, Aldolase, TIM barrel, LYASE
Deposited on 2015-06-19, released 2016-06-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-02-19, with a file datestamp of 2020-02-14.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dihydrodipicolinate synthase/N-acetylneuraminate lyase
    Species: Corynebacterium glutamicum ATCC 13032 [TaxId:196627]
    Gene: Cgl2646
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5c54a_
  • Chain 'B':
    Compound: Dihydrodipicolinate synthase/N-acetylneuraminate lyase
    Species: Corynebacterium glutamicum ATCC 13032 [TaxId:196627]
    Gene: Cgl2646
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5c54b_
  • Chain 'C':
    Compound: Dihydrodipicolinate synthase/N-acetylneuraminate lyase
    Species: Corynebacterium glutamicum ATCC 13032 [TaxId:196627]
    Gene: Cgl2646
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5c54c_
  • Chain 'D':
    Compound: Dihydrodipicolinate synthase/N-acetylneuraminate lyase
    Species: Corynebacterium glutamicum ATCC 13032 [TaxId:196627]
    Gene: Cgl2646
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5c54d_
  • Chain 'E':
    Compound: Dihydrodipicolinate synthase/N-acetylneuraminate lyase
    Species: Corynebacterium glutamicum ATCC 13032 [TaxId:196627]
    Gene: Cgl2646
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5c54e_
  • Chain 'F':
    Compound: Dihydrodipicolinate synthase/N-acetylneuraminate lyase
    Species: Corynebacterium glutamicum ATCC 13032 [TaxId:196627]
    Gene: Cgl2646
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5c54f_
  • Chain 'G':
    Compound: Dihydrodipicolinate synthase/N-acetylneuraminate lyase
    Species: Corynebacterium glutamicum ATCC 13032 [TaxId:196627]
    Gene: Cgl2646
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5c54g_
  • Chain 'H':
    Compound: Dihydrodipicolinate synthase/N-acetylneuraminate lyase
    Species: Corynebacterium glutamicum ATCC 13032 [TaxId:196627]
    Gene: Cgl2646
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5c54h_
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5c54A (A:)
    masatftgvippvmtplhadgsvdveslrklvdhlinggvdglfalgssgeaafltraqr
    klalttiiehtagrvpvtagvietttarvielvedaleagaeglvatapfytrthdveie
    ehfrkihaaapelplfaynipvsvhsnlnpvmlltlakdgvlagtkdssgndgairslie
    arddaglteqfkiltgsettvdfaylagadgvvpglgnvdpaayaalaklcldgkwaeaa
    alqkrinhlfhivfvgdtshmsgssaglggfktalahlgiiesnamavphqslsdeetar
    ihaivdeflyta
    

    Sequence, based on observed residues (ATOM records): (download)
    >5c54A (A:)
    satftgvippvmtplhadgsvdveslrklvdhlinggvdglfalgssgeaafltraqrkl
    alttiiehtagrvpvtagvietttarvielvedaleagaeglvatapfytrthdveieeh
    frkihaaapelplfaynipvsvhsnlnpvmlltlakdgvlagtkdssgndgairsliear
    ddaglteqfkiltgsettvdfaylagadgvvpglgnvdpaayaalaklcldgkwaeaaal
    qkrinhlfhivfvgdtshmsgssaglggfktalahlgiiesnamavphqslsdeetarih
    aivdeflyta
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5c54B (B:)
    masatftgvippvmtplhadgsvdveslrklvdhlinggvdglfalgssgeaafltraqr
    klalttiiehtagrvpvtagvietttarvielvedaleagaeglvatapfytrthdveie
    ehfrkihaaapelplfaynipvsvhsnlnpvmlltlakdgvlagtkdssgndgairslie
    arddaglteqfkiltgsettvdfaylagadgvvpglgnvdpaayaalaklcldgkwaeaa
    alqkrinhlfhivfvgdtshmsgssaglggfktalahlgiiesnamavphqslsdeetar
    ihaivdeflyta
    

    Sequence, based on observed residues (ATOM records): (download)
    >5c54B (B:)
    satftgvippvmtplhadgsvdveslrklvdhlinggvdglfalgssgeaafltraqrkl
    alttiiehtagrvpvtagvietttarvielvedaleagaeglvatapfytrthdveieeh
    frkihaaapelplfaynipvsvhsnlnpvmlltlakdgvlagtkdssgndgairsliear
    ddaglteqfkiltgsettvdfaylagadgvvpglgnvdpaayaalaklcldgkwaeaaal
    qkrinhlfhivfvgdtshmsgssaglggfktalahlgiiesnamavphqslsdeetarih
    aivdeflyta
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5c54C (C:)
    masatftgvippvmtplhadgsvdveslrklvdhlinggvdglfalgssgeaafltraqr
    klalttiiehtagrvpvtagvietttarvielvedaleagaeglvatapfytrthdveie
    ehfrkihaaapelplfaynipvsvhsnlnpvmlltlakdgvlagtkdssgndgairslie
    arddaglteqfkiltgsettvdfaylagadgvvpglgnvdpaayaalaklcldgkwaeaa
    alqkrinhlfhivfvgdtshmsgssaglggfktalahlgiiesnamavphqslsdeetar
    ihaivdeflyta
    

    Sequence, based on observed residues (ATOM records): (download)
    >5c54C (C:)
    satftgvippvmtplhadgsvdveslrklvdhlinggvdglfalgssgeaafltraqrkl
    alttiiehtagrvpvtagvietttarvielvedaleagaeglvatapfytrthdveieeh
    frkihaaapelplfaynipvsvhsnlnpvmlltlakdgvlagtkdssgndgairsliear
    ddaglteqfkiltgsettvdfaylagadgvvpglgnvdpaayaalaklcldgkwaeaaal
    qkrinhlfhivfvgdtshmsgssaglggfktalahlgiiesnamavphqslsdeetarih
    aivdeflyta
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5c54D (D:)
    masatftgvippvmtplhadgsvdveslrklvdhlinggvdglfalgssgeaafltraqr
    klalttiiehtagrvpvtagvietttarvielvedaleagaeglvatapfytrthdveie
    ehfrkihaaapelplfaynipvsvhsnlnpvmlltlakdgvlagtkdssgndgairslie
    arddaglteqfkiltgsettvdfaylagadgvvpglgnvdpaayaalaklcldgkwaeaa
    alqkrinhlfhivfvgdtshmsgssaglggfktalahlgiiesnamavphqslsdeetar
    ihaivdeflyta
    

    Sequence, based on observed residues (ATOM records): (download)
    >5c54D (D:)
    satftgvippvmtplhadgsvdveslrklvdhlinggvdglfalgssgeaafltraqrkl
    alttiiehtagrvpvtagvietttarvielvedaleagaeglvatapfytrthdveieeh
    frkihaaapelplfaynipvsvhsnlnpvmlltlakdgvlagtkdssgndgairsliear
    ddaglteqfkiltgsettvdfaylagadgvvpglgnvdpaayaalaklcldgkwaeaaal
    qkrinhlfhivfvgdtshsgssaglggfktalahlgiiesnamavphqslsdeetariha
    ivdeflyt
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >5c54E (E:)
    masatftgvippvmtplhadgsvdveslrklvdhlinggvdglfalgssgeaafltraqr
    klalttiiehtagrvpvtagvietttarvielvedaleagaeglvatapfytrthdveie
    ehfrkihaaapelplfaynipvsvhsnlnpvmlltlakdgvlagtkdssgndgairslie
    arddaglteqfkiltgsettvdfaylagadgvvpglgnvdpaayaalaklcldgkwaeaa
    alqkrinhlfhivfvgdtshmsgssaglggfktalahlgiiesnamavphqslsdeetar
    ihaivdeflyta
    

    Sequence, based on observed residues (ATOM records): (download)
    >5c54E (E:)
    satftgvippvmtplhadgsvdveslrklvdhlinggvdglfalgssgeaafltraqrkl
    alttiiehtagrvpvtagvietttarvielvedaleagaeglvatapfytrthdveieeh
    frkihaaapelplfaynipvsvhsnlnpvmlltlakdgvlagtkdssgndgairsliear
    ddaglteqfkiltgsettvdfaylagadgvvpglgnvdpaayaalaklcldgkwaeaaal
    qkrinhlfhivfvgdtshmsgssaglggfktalahlgiiesnamavphqslsdeetarih
    aivdefly
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >5c54F (F:)
    masatftgvippvmtplhadgsvdveslrklvdhlinggvdglfalgssgeaafltraqr
    klalttiiehtagrvpvtagvietttarvielvedaleagaeglvatapfytrthdveie
    ehfrkihaaapelplfaynipvsvhsnlnpvmlltlakdgvlagtkdssgndgairslie
    arddaglteqfkiltgsettvdfaylagadgvvpglgnvdpaayaalaklcldgkwaeaa
    alqkrinhlfhivfvgdtshmsgssaglggfktalahlgiiesnamavphqslsdeetar
    ihaivdeflyta
    

    Sequence, based on observed residues (ATOM records): (download)
    >5c54F (F:)
    satftgvippvmtplhadgsvdveslrklvdhlinggvdglfalgssgeaafltraqrkl
    alttiiehtagrvpvtagvietttarvielvedaleagaeglvatapfytrthdveieeh
    frkihaaapelplfaynipvsvhsnlnpvmlltlakdgvlagtkdssgndgairsliear
    ddaglteqfkiltgsettvdfaylagadgvvpglgnvdpaayaalaklcldgkwaeaaal
    qkrinhlfhivfvgdtshmsgssaglggfktalahlgiiesnamavphqslsdeetarih
    aivdeflyta
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >5c54G (G:)
    masatftgvippvmtplhadgsvdveslrklvdhlinggvdglfalgssgeaafltraqr
    klalttiiehtagrvpvtagvietttarvielvedaleagaeglvatapfytrthdveie
    ehfrkihaaapelplfaynipvsvhsnlnpvmlltlakdgvlagtkdssgndgairslie
    arddaglteqfkiltgsettvdfaylagadgvvpglgnvdpaayaalaklcldgkwaeaa
    alqkrinhlfhivfvgdtshmsgssaglggfktalahlgiiesnamavphqslsdeetar
    ihaivdeflyta
    

    Sequence, based on observed residues (ATOM records): (download)
    >5c54G (G:)
    tftgvippvmtplhadgsvdveslrklvdhlinggvdglfalgssgeaafltraqrklal
    ttiiehtagrvpvtagvietttarvielvedaleagaeglvatapfytrthdveieehfr
    kihaaapelplfaynipvsvhsnlnpvmlltlakdgvlagtkdssgndgairslieardd
    aglteqfkiltgsettvdfaylagadgvvpglgnvdpaayaalaklcldgkwaeaaalqk
    rinhlfhivfvgdtshmsgssaglggfktalahlgiiesnamavphqslsdeetarihai
    vdeflyt
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >5c54H (H:)
    masatftgvippvmtplhadgsvdveslrklvdhlinggvdglfalgssgeaafltraqr
    klalttiiehtagrvpvtagvietttarvielvedaleagaeglvatapfytrthdveie
    ehfrkihaaapelplfaynipvsvhsnlnpvmlltlakdgvlagtkdssgndgairslie
    arddaglteqfkiltgsettvdfaylagadgvvpglgnvdpaayaalaklcldgkwaeaa
    alqkrinhlfhivfvgdtshmsgssaglggfktalahlgiiesnamavphqslsdeetar
    ihaivdeflyta
    

    Sequence, based on observed residues (ATOM records): (download)
    >5c54H (H:)
    satftgvippvmtplhadgsvdveslrklvdhlinggvdglfalgssgeaafltraqrkl
    alttiiehtagrvpvtagvietttarvielvedaleagaeglvatapfytrthdveieeh
    frkihaaapelplfaynipvsvhsnlnpvmlltlakdgvlagtkdssgndgairsliear
    ddaglteqfkiltgsettvdfaylagadgvvpglgnvdpaayaalaklcldgkwaeaaal
    qkrinhlfhivfvgdtshmsgssaglggfktalahlgiiesnamavphqslsdeetarih
    aivdeflyta