PDB entry 5c1i

View 5c1i on RCSB PDB site
Description: m1A58 tRNA methyltransferase mutant - D170A
Class: transferase
Keywords: transferase, TrmI, m1A
Deposited on 2015-06-14, released 2015-06-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-03-02, with a file datestamp of 2016-02-26.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tRNA (adenine(58)-N(1))-methyltransferase TrmI
    Species: Thermus thermophilus HB27 [TaxId:262724]
    Gene: trmI, TT_C0244
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8GBB2 (0-End)
      • engineered mutation (165)
      • conflict (249)
    Domains in SCOPe 2.08: d5c1ia_
  • Chain 'B':
    Compound: tRNA (adenine(58)-N(1))-methyltransferase TrmI
    Species: Thermus thermophilus HB27 [TaxId:262724]
    Gene: trmI, TT_C0244
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8GBB2 (0-250)
      • engineered mutation (165)
      • conflict (249)
    Domains in SCOPe 2.08: d5c1ib_
  • Chain 'C':
    Compound: tRNA (adenine(58)-N(1))-methyltransferase TrmI
    Species: Thermus thermophilus HB27 [TaxId:262724]
    Gene: trmI, TT_C0244
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8GBB2 (0-250)
      • engineered mutation (165)
      • conflict (249)
    Domains in SCOPe 2.08: d5c1ic_
  • Chain 'D':
    Compound: tRNA (adenine(58)-N(1))-methyltransferase TrmI
    Species: Thermus thermophilus HB27 [TaxId:262724]
    Gene: trmI, TT_C0244
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8GBB2 (Start-250)
      • engineered mutation (165)
      • conflict (249)
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5c1iA (A:)
gplllkdrkgraylvfpkeggvfhhhkgsvphealleagpggvvrthlgeelsvhrptle
eyllhmkrsatptypkdasamvtlldlapgmrvleagtgsggltlflaravgekglvesy
earphhlaqaernvrafwqvenvrfhlgkleeaeleeaaydgvalalmepwkvlekaala
lkpdrflvaylpnitqvlelvraaeahpfrlervlevgwrewevrlpvahprfqqvghta
flvalrrwkgs

    Sequence, based on observed residues (ATOM records): (download) 
    >5c1iA (A:)
gpllllvfphealleagpggvvsvhrptleeyllhmkrsatptypkdasamvtlldlapg
mrvleagtgsggltlflaravgekglvesyearphhlaqaernvrafwqvenvrfhlgkl
eeaeleeaaydgvalalmepwkvlekaalalkpdrflvaylpnitqvlelvraaeahpfr
lervlevgwrewevrlpvahprfqqvghtaflvalrrwkg

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5c1iB (B:)
gplllkdrkgraylvfpkeggvfhhhkgsvphealleagpggvvrthlgeelsvhrptle
eyllhmkrsatptypkdasamvtlldlapgmrvleagtgsggltlflaravgekglvesy
earphhlaqaernvrafwqvenvrfhlgkleeaeleeaaydgvalalmepwkvlekaala
lkpdrflvaylpnitqvlelvraaeahpfrlervlevgwrewevrlpvahprfqqvghta
flvalrrwkgs

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5c1iC (C:)
gplllkdrkgraylvfpkeggvfhhhkgsvphealleagpggvvrthlgeelsvhrptle
eyllhmkrsatptypkdasamvtlldlapgmrvleagtgsggltlflaravgekglvesy
earphhlaqaernvrafwqvenvrfhlgkleeaeleeaaydgvalalmepwkvlekaala
lkpdrflvaylpnitqvlelvraaeahpfrlervlevgwrewevrlpvahprfqqvghta
flvalrrwkgs

    Sequence, based on observed residues (ATOM records): (download) 
    >5c1iC (C:)
gplllkaylvfsvhrptleeyllhmkrsatptypkdasamvtlldlapgmrvleagtgsg
gltlflaravgekglvesyearphhlaqaernvrafwqvenvrfhlgkleeaeleeaayd
gvalalmepwkvlekaalalkpdrflvaylpnitqvlelvraaeahpfrlervlevgwre
wevrlpvahprfqqvghtaflvalrrwkgs

  • Chain 'D':
    No sequence available.