PDB entry 5c0o

View 5c0o on RCSB PDB site
Description: m1A58 tRNA methyltransferase mutant - Y78A
Class: transferase
Keywords: transferase, TrmI, m1A
Deposited on 2015-06-12, released 2015-07-08
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-03-02, with a file datestamp of 2016-02-26.
Experiment type: XRAY
Resolution: 2.62 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'E':
    Compound: tRNA (adenine(58)-N(1))-methyltransferase TrmI
    Species: Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) [TaxId:262724]
    Gene: trmI, TT_C0244
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8GBB2
      • engineered mutation (77)
    Domains in SCOPe 2.07: d5c0oe_
  • Chain 'F':
    Compound: tRNA (adenine(58)-N(1))-methyltransferase TrmI
    Species: Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) [TaxId:262724]
    Gene: trmI, TT_C0244
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8GBB2
      • engineered mutation (77)
    Domains in SCOPe 2.07: d5c0of_
  • Chain 'G':
    Compound: tRNA (adenine(58)-N(1))-methyltransferase TrmI
    Species: Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) [TaxId:262724]
    Gene: trmI, TT_C0244
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8GBB2
      • engineered mutation (77)
    Domains in SCOPe 2.07: d5c0og_
  • Chain 'H':
    Compound: tRNA (adenine(58)-N(1))-methyltransferase TrmI
    Species: Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) [TaxId:262724]
    Gene: trmI, TT_C0244
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8GBB2
      • engineered mutation (77)
  • Heterogens: SAM, SO4, HOH

PDB Chain Sequences:

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5c0oE (E:)
mawpgplllkdrkgraylvfpkeggvfhhhkgsvphealleagpggvvrthlgeelsvhr
ptleeyllhmkrsatptapkdasamvtlldlapgmrvleagtgsggltlflaravgekgl
vesyearphhlaqaernvrafwqvenvrfhlgkleeaeleeaaydgvaldlmepwkvlek
aalalkpdrflvaylpnitqvlelvraaeahpfrlervlevgwrewevrlpvahprfqqv
ghtaflvalrrwkas

    Sequence, based on observed residues (ATOM records): (download) 
    >5c0oE (E:)
gplllkdrkgraylvfpkeggvfvphealleagpggvvelsvhrptleeyllhmkrsatp
tapkdasamvtlldlapgmrvleagtgsggltlflaravgekglvesyearphhlaqaer
nvrafwqvenvrfhlgkleeaeleeaaydgvaldlmepwkvlekaalalkpdrflvaylp
nitqvlelvraaeahpfrlervlevgwrewevrlpvahprfqqvghtaflvalrrwka

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5c0oF (F:)
mawpgplllkdrkgraylvfpkeggvfhhhkgsvphealleagpggvvrthlgeelsvhr
ptleeyllhmkrsatptapkdasamvtlldlapgmrvleagtgsggltlflaravgekgl
vesyearphhlaqaernvrafwqvenvrfhlgkleeaeleeaaydgvaldlmepwkvlek
aalalkpdrflvaylpnitqvlelvraaeahpfrlervlevgwrewevrlpvahprfqqv
ghtaflvalrrwkas

    Sequence, based on observed residues (ATOM records): (download) 
    >5c0oF (F:)
plllkdrkgraylvfpkeggvfsvphealleagpggvvrthlgeelsvhrptleeyllhm
ktptapkdasamvtlldlapgmrvleagtgsggltlflaravgekglvesyearphhlaq
aernvrafwqvenvrfhlgkleaaydgvaldlmepwkvlaalalkpdrflvaylpnitqv
lelvraaeahpfrlervlevgwrewevrlpvahprfqqvghtaflvalrrwk

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5c0oG (G:)
mawpgplllkdrkgraylvfpkeggvfhhhkgsvphealleagpggvvrthlgeelsvhr
ptleeyllhmkrsatptapkdasamvtlldlapgmrvleagtgsggltlflaravgekgl
vesyearphhlaqaernvrafwqvenvrfhlgkleeaeleeaaydgvaldlmepwkvlek
aalalkpdrflvaylpnitqvlelvraaeahpfrlervlevgwrewevrlpvahprfqqv
ghtaflvalrrwkas

    Sequence, based on observed residues (ATOM records): (download) 
    >5c0oG (G:)
gplllkdrkgralvfpkeggvfsvphealleagpggvvlsvhrptleeyllhmkrsatpt
apkdasamvtlldlapgmrvleagtgsggltlflaravgekglvesyearphhlaqaern
vrafwqvenvrfhlgkleeaeleeaaydgvaldlmepwkvlekaalalkpdrflvaylpn
itqvlelvraaeahpfrlervlevgwrewevrlpvahprfqqvghtaflvalrrwka

  • Chain 'H':
    No sequence available.