PDB entry 5bxi

View 5bxi on RCSB PDB site
Description: 1.7 Angstrom Resolution Crystal Structure of Putative Nucleoside Diphosphate Kinase from Toxoplasma gondii with Tyrosine of Tag Bound to Active Site
Class: transferase
Keywords: Structural Genomics, NIAID, National Institute of Allergy and Infectious Diseases, Center for Structural Genomics of Infectious Diseases, CSGID, 2-Layer Sandwich, Putative Nucleoside Diphosphate Kinase
Deposited on 2015-06-09, released 2015-06-24
The last revision prior to the SCOPe 2.06 freeze date was dated 2015-06-24, with a file datestamp of 2015-06-19.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nucleoside diphosphate kinase
    Species: Toxoplasma gondii ME49 [TaxId:508771]
    Gene: TGME49_295350
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5bxia_
  • Chain 'B':
    Compound: Nucleoside diphosphate kinase
    Species: Toxoplasma gondii ME49 [TaxId:508771]
    Gene: TGME49_295350
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5bxib_
  • Chain 'C':
    Compound: Nucleoside diphosphate kinase
    Species: Toxoplasma gondii ME49 [TaxId:508771]
    Gene: TGME49_295350
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5bxic_
  • Chain 'D':
    Compound: Nucleoside diphosphate kinase
    Species: Toxoplasma gondii ME49 [TaxId:508771]
    Gene: TGME49_295350
    Database cross-references and differences (RAF-indexed):
    • Uniprot S8FF85 (Start-154)
      • expression tag (155-159)
    Domains in SCOPe 2.06: d5bxid1, d5bxid2
  • Chain 'E':
    Compound: Nucleoside diphosphate kinase
    Species: Toxoplasma gondii ME49 [TaxId:508771]
    Gene: TGME49_295350
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5bxie_
  • Chain 'F':
    Compound: Nucleoside diphosphate kinase
    Species: Toxoplasma gondii ME49 [TaxId:508771]
    Gene: TGME49_295350
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5bxif_
  • Chain 'G':
    Compound: Nucleoside diphosphate kinase
    Species: Toxoplasma gondii ME49 [TaxId:508771]
    Gene: TGME49_295350
    Database cross-references and differences (RAF-indexed):
    • Uniprot S8FF85 (Start-154)
      • expression tag (155-159)
    Domains in SCOPe 2.06: d5bxig1, d5bxig2
  • Chain 'H':
    Compound: Nucleoside diphosphate kinase
    Species: Toxoplasma gondii ME49 [TaxId:508771]
    Gene: TGME49_295350
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5bxih_
  • Chain 'I':
    Compound: Nucleoside diphosphate kinase
    Species: Toxoplasma gondii ME49 [TaxId:508771]
    Gene: TGME49_295350
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5bxii_
  • Chain 'J':
    Compound: Nucleoside diphosphate kinase
    Species: Toxoplasma gondii ME49 [TaxId:508771]
    Gene: TGME49_295350
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5bxij_
  • Chain 'K':
    Compound: Nucleoside diphosphate kinase
    Species: Toxoplasma gondii ME49 [TaxId:508771]
    Gene: TGME49_295350
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5bxik_
  • Chain 'L':
    Compound: Nucleoside diphosphate kinase
    Species: Toxoplasma gondii ME49 [TaxId:508771]
    Gene: TGME49_295350
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5bxil_
  • Heterogens: BCT, PEG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5bxiA (A:)
maakqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgk
pffpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivh
gsdsvesankeislwftpeeicewtsaqhkwvyeqgenly

    Sequence, based on observed residues (ATOM records): (download) 
    >5bxiA (A:)
akqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgkpf
fpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivhgs
dsvesankeislwftpeeicewtsaqhkwvye

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5bxiB (B:)
maakqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgk
pffpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivh
gsdsvesankeislwftpeeicewtsaqhkwvyeqgenly

    Sequence, based on observed residues (ATOM records): (download) 
    >5bxiB (B:)
akqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgkpf
fpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivhgs
dsvesankeislwftpeeicewtsaqhkwvyeq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5bxiC (C:)
maakqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgk
pffpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivh
gsdsvesankeislwftpeeicewtsaqhkwvyeqgenly

    Sequence, based on observed residues (ATOM records): (download) 
    >5bxiC (C:)
kqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyaglisymts
gpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivhgsdsvesankei
slwftpeeicewtsaqhkwvyeq

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5bxiD (D:)
maakqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgk
pffpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivh
gsdsvesankeislwftpeeicewtsaqhkwvyeqgenly

    Sequence, based on observed residues (ATOM records): (download) 
    >5bxiD (D:)
akqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgkpf
fpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivhgs
dsvesankeislwftpeeicewtsaqhkwvyeqgenly

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5bxiE (E:)
maakqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgk
pffpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivh
gsdsvesankeislwftpeeicewtsaqhkwvyeqgenly

    Sequence, based on observed residues (ATOM records): (download) 
    >5bxiE (E:)
akqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgkpf
fpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivhgs
dsvesankeislwftpeeicewtsaqhkwvyeq

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5bxiF (F:)
maakqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgk
pffpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivh
gsdsvesankeislwftpeeicewtsaqhkwvyeqgenly

    Sequence, based on observed residues (ATOM records): (download) 
    >5bxiF (F:)
akqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgkpf
fpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivhgs
dsvesankeislwftpeeicewtsaqhkwvyeq

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5bxiG (G:)
maakqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgk
pffpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivh
gsdsvesankeislwftpeeicewtsaqhkwvyeqgenly

    Sequence, based on observed residues (ATOM records): (download) 
    >5bxiG (G:)
akqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgkpf
fpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivhgs
dsvesankeislwftpeeicewtsaqhkwvyeqgenly

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5bxiH (H:)
maakqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgk
pffpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivh
gsdsvesankeislwftpeeicewtsaqhkwvyeqgenly

    Sequence, based on observed residues (ATOM records): (download) 
    >5bxiH (H:)
akqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgkpf
fpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivhgs
dsvesankeislwftpeeicewtsaqhkwvye

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >5bxiI (I:)
maakqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgk
pffpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivh
gsdsvesankeislwftpeeicewtsaqhkwvyeqgenly

    Sequence, based on observed residues (ATOM records): (download) 
    >5bxiI (I:)
kqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgkpff
pglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivhgsd
svesankeislwftpeeicewtsaqhkwvyeq

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >5bxiJ (J:)
maakqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgk
pffpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivh
gsdsvesankeislwftpeeicewtsaqhkwvyeqgenly

    Sequence, based on observed residues (ATOM records): (download) 
    >5bxiJ (J:)
kqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgkpff
pglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivhgsd
svesankeislwftpeeicewtsaqhkwvyeq

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >5bxiK (K:)
maakqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgk
pffpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivh
gsdsvesankeislwftpeeicewtsaqhkwvyeqgenly

    Sequence, based on observed residues (ATOM records): (download) 
    >5bxiK (K:)
akqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgkpf
fpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivhgs
dsvesankeislwftpeeicewtsaqhkwvye

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >5bxiL (L:)
maakqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgk
pffpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivh
gsdsvesankeislwftpeeicewtsaqhkwvyeqgenly

    Sequence, based on observed residues (ATOM records): (download) 
    >5bxiL (L:)
akqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgkpf
fpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivhgs
dsvesankeislwftpeeicewtsaqhkwvye