PDB entry 5bs6

View 5bs6 on RCSB PDB site
Description: Apo structure of transcriptional factor AraR from Bacteroides thetaiotaomicron VPI
Class: transcription
Keywords: Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, transcriptional regulator, Bacteroides thetaiotaomicron, helix-turn-helix motif, Nudix fold, DNA binding
Deposited on 2015-06-01, released 2015-06-17
The last revision prior to the SCOPe 2.05 freeze date was dated 2015-06-17, with a file datestamp of 2015-06-12.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: transcriptional regulator AraR
    Species: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) [TaxId:226186]
    Gene: BT_0354
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d5bs6a1, d5bs6a2
  • Chain 'B':
    Compound: transcriptional regulator AraR
    Species: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) [TaxId:226186]
    Gene: BT_0354
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8AAV8 (3-227)
      • expression tag (2)
    Domains in SCOPe 2.05: d5bs6b1, d5bs6b2
  • Chain 'C':
    Compound: transcriptional regulator AraR
    Species: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) [TaxId:226186]
    Gene: BT_0354
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8AAV8 (3-227)
      • expression tag (2)
    Domains in SCOPe 2.05: d5bs6c1, d5bs6c2
  • Chain 'D':
    Compound: transcriptional regulator AraR
    Species: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) [TaxId:226186]
    Gene: BT_0354
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8AAV8 (3-227)
      • expression tag (0-2)
    Domains in SCOPe 2.05: d5bs6d1, d5bs6d2
  • Heterogens: EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5bs6A (A:)
snamknyyssnptfylgidciifgfnegeisllllkrnfepamgewslmggfvqkdesvd
daakrvlaeltglenvymeqvgafgaidrdpgervvsiayyalinineydrelvqkhnay
wvninelpalifdhpemvdkaremmkqkasvepigfnllpklftlsqlqslyeaiygepm
dkrnfrkrvaemdfiektdkidklgskrgaalykfngkayrkdpkfkl

    Sequence, based on observed residues (ATOM records): (download) 
    >5bs6A (A:)
nyyssnptfylgidciifgfnegeisllllkrnfepamgewslmggfvqkdesvddaakr
vlaeltglenvymeqvgafgaidrdpgervvsiayyalinineydrelvqkhnaywvnin
elpalifdhpemvdkaremmkqkasvepigfnllpklftlsqlqslyeaiygepmdkrnf
rkrvaemdfiektdkidklgskrgaalykfngkayrkdpkfkl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5bs6B (B:)
snamknyyssnptfylgidciifgfnegeisllllkrnfepamgewslmggfvqkdesvd
daakrvlaeltglenvymeqvgafgaidrdpgervvsiayyalinineydrelvqkhnay
wvninelpalifdhpemvdkaremmkqkasvepigfnllpklftlsqlqslyeaiygepm
dkrnfrkrvaemdfiektdkidklgskrgaalykfngkayrkdpkfkl

    Sequence, based on observed residues (ATOM records): (download) 
    >5bs6B (B:)
amknyyssnptfylgidciifgfnegeisllllkrnfepamgewslmggfvqkdesvdda
akrvlaeltglenvymeqvgafgaidrdpgervvsiayyalinineydrelvqkhnaywv
ninelpalifdhpemvdkaremmkqkasvepigfnllpklftlsqlqslyeaiygepmdk
rnfrkrvaemdfiektdkidklgskrgaalykfngkayrkdpfkl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5bs6C (C:)
snamknyyssnptfylgidciifgfnegeisllllkrnfepamgewslmggfvqkdesvd
daakrvlaeltglenvymeqvgafgaidrdpgervvsiayyalinineydrelvqkhnay
wvninelpalifdhpemvdkaremmkqkasvepigfnllpklftlsqlqslyeaiygepm
dkrnfrkrvaemdfiektdkidklgskrgaalykfngkayrkdpkfkl

    Sequence, based on observed residues (ATOM records): (download) 
    >5bs6C (C:)
amknyyssnptfylgidciifgfnegeisllllkrnfepamgewslmggfvqkdesvdda
akrvlaeltglenvymeqvgafgaidrdpgervvsiayyalinineydrelvqkhnaywv
ninelpalifdhpemvdkaremmkqkasvepigfnllpklftlsqlqslyeaiygepmdk
rnfrkrvaemdfiektdkidklgskrgaalykfngkayrkdpkfkl

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5bs6D (D:)
snamknyyssnptfylgidciifgfnegeisllllkrnfepamgewslmggfvqkdesvd
daakrvlaeltglenvymeqvgafgaidrdpgervvsiayyalinineydrelvqkhnay
wvninelpalifdhpemvdkaremmkqkasvepigfnllpklftlsqlqslyeaiygepm
dkrnfrkrvaemdfiektdkidklgskrgaalykfngkayrkdpkfkl