PDB entry 5bnp
View 5bnp on RCSB PDB site
Description: Crystal structure of human enterovirus D68 in complex with 3'SLN
Class: virus
Keywords: Enterovirus, Capsid, Beta jelly roll, Virus, Receptor
Deposited on
2015-05-26, released
2015-11-18
The last revision prior to the SCOPe 2.06 freeze date was dated
2015-11-25, with a file datestamp of
2015-11-20.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: N/A
AEROSPACI score: 0.27
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Capsid protein VP1
Species: Enterovirus D68 [TaxId:42789]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5bnpa_ - Chain 'B':
Compound: capsid protein VP2
Species: Enterovirus D68 [TaxId:42789]
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: capsid protein vp3
Species: Enterovirus D68 [TaxId:42789]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5bnpc_ - Chain 'D':
Compound: capsid protein VP4
Species: Enterovirus D68 [TaxId:42789]
Database cross-references and differences (RAF-indexed):
- Heterogens: 4U2, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5bnpA (A:)
vesiiktatdtvkseinaelgvvpslnavetgatsntepeeaiqtrtvinqhgvsetlve
nflgraalvskksfeyknhasssagthknffkwtintksfvqlrrklelftylrfdaeit
ilttvavngnndstymglpdltlqamfvptgaltpkeqdsfhwqsgsnasvffkisdppa
rmtipfmcinsaysvfydgfagfeknglyginpadtignlcvrivnehqpvgftvtvrvy
mkpkhikawaprpprtmpymsiananykgrdtapntlnaiignrasvttmphnivtt
Sequence, based on observed residues (ATOM records): (download)
>5bnpA (A:)
vesiiktatdtvkseinaelgvvpslnavetgatsntepeeaiqtrtvinqhgvsetlve
nflgraalvskksfeyknhasssthknffkwtintksfvqlrrklelftylrfdaeitil
ttvavnymglpdltlqamfvptgaltpkeqdsfhwqsgsnasvffkisdpparmtipfmc
insaysvfydgfagfeknglyginpadtignlcvrivnehqpvgftvtvrvymkpkhika
waprpprtmpymsiananykgrdtapntlnaiignrasvttmphniv
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>5bnpC (C:)
gvptyllpgsgqflttddhssapvlpcfnptpemhipgqirnmlemiqvesmmeinntdg
angmerlrvdisvqadldqllfnipldiqldgplrntlvgnisryythwsgslemtfmfc
gsfmatgklilcytppggscpttretamlgthivwdfglqssitliipwisgshyrmfns
dakstnanvgyvtcfmqtnlivpsessdtcsligfiaakddfslrlmrdspdigqsnhlh
gaeaayq
- Chain 'D':
No sequence available.