PDB entry 5bnn
View 5bnn on RCSB PDB site
Description: Crystal structure of human enterovirus D68 in complex with 6'SL
Class: virus
Keywords: Enterovirus, Capsid, Beta jelly roll, Receptor, Icosahedral virus, VIRUS
Deposited on
2015-05-26, released
2015-11-18
The last revision prior to the SCOPe 2.05 freeze date was dated
2015-11-18, with a file datestamp of
2015-11-13.
Experiment type: XRAY
Resolution: 2.32 Å
R-factor: N/A
AEROSPACI score: 0.24
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Capsid protein VP1
Species: Enterovirus D68 [TaxId:42789]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d5bnna_ - Chain 'B':
Compound: capsid protein VP2
Species: Enterovirus D68 [TaxId:42789]
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: capsid protein vp3
Species: Enterovirus D68 [TaxId:42789]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d5bnnc_ - Chain 'D':
Compound: capsid protein VP4
Species: Enterovirus D68 [TaxId:42789]
Database cross-references and differences (RAF-indexed):
- Heterogens: 4U0, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5bnnA (A:)
vesiiktatdtvkseinaelgvvpslnavetgatsntepeeaiqtrtvinqhgvsetlve
nflgraalvskksfeyknhasssagthknffkwtintksfvqlrrklelftylrfdaeit
ilttvavngnndstymglpdltlqamfvptgaltpkeqdsfhwqsgsnasvffkisdppa
rmtipfmcinsaysvfydgfagfeknglyginpadtignlcvrivnehqpvgftvtvrvy
mkpkhikawaprpprtmpymsiananykgrdtapntlnaiignrasvttmphnivtt
Sequence, based on observed residues (ATOM records): (download)
>5bnnA (A:)
vesiiktatdtvkseinaelgvvpslnavetgatsntepeeaiqtrtvinqhgvsetlve
nflgraalvskksfeyknhasthknffkwtintksfvqlrrklelftylrfdaeitiltt
vavnymglpdltlqamfvptgaltpkeqdsfhwqsgsnasvffkisdpparmtipfmcin
saysvfydgfagfeknglyginpadtignlcvrivnehqpvgftvtvrvymkpkhikawa
prpprtmpymsiananykgrdtapntlnaiignrasvttmphniv
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>5bnnC (C:)
gvptyllpgsgqflttddhssapvlpcfnptpemhipgqirnmlemiqvesmmeinntdg
angmerlrvdisvqadldqllfnipldiqldgplrntlvgnisryythwsgslemtfmfc
gsfmatgklilcytppggscpttretamlgthivwdfglqssitliipwisgshyrmfns
dakstnanvgyvtcfmqtnlivpsessdtcsligfiaakddfslrlmrdspdigqsnhlh
gaeaayq
- Chain 'D':
No sequence available.