PDB entry 5bk5

View 5bk5 on RCSB PDB site
Description: Crystal structure of the anti-circumsporozoite protein 663 germline antibody
Class: immune system
Keywords: Malaria, Circumsporozoite protein, Fab, IMMUNE SYSTEM
Deposited on 2017-09-12, released 2017-12-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-02-26, with a file datestamp of 2020-02-21.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 663 germline antibody, light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5BK5 (0-218)
    Domains in SCOPe 2.08: d5bk5a1, d5bk5a2
  • Chain 'B':
    Compound: 663 germline antibody, heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5BK5 (0-End)
    Domains in SCOPe 2.08: d5bk5b_
  • Chain 'C':
    Compound: 663 germline antibody, light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5BK5 (0-End)
    Domains in SCOPe 2.08: d5bk5c1, d5bk5c2
  • Chain 'D':
    Compound: 663 germline antibody, heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5BK5 (0-End)
    Domains in SCOPe 2.08: d5bk5d_
  • Chain 'E':
    Compound: 663 germline antibody, light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5BK5 (0-218)
    Domains in SCOPe 2.08: d5bk5e1, d5bk5e2
  • Chain 'F':
    Compound: 663 germline antibody, heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5BK5 (0-End)
    Domains in SCOPe 2.08: d5bk5f_
  • Chain 'G':
    Compound: 663 germline antibody, light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5BK5 (0-End)
    Domains in SCOPe 2.08: d5bk5g1, d5bk5g2
  • Chain 'H':
    Compound: 663 germline antibody, heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5BK5 (0-End)
    Domains in SCOPe 2.08: d5bk5h_
  • Heterogens: GOL

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5bk5A (A:)
divmtqsplslpvtpgepasiscrssqsllhsngynyldwylqkpgqspqlliylgsnra
sgvpdrfsgsgsgtdftlkisrveaedvgvyycmqalqtpytfgqgtkleikrtvaapsv
fifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysl
sstltlskadyekhkvyacevthqglsspvtksfnrgec

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5bk5B (B:)
evqllesggglvqpggslrlscaasgftfssyamswvrqapgkglewvsviysggsstyy
adsvkgrftisrdnskntlylqmnslraedtavyycttllilesdvgvdywgqgtlvtvs
sastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqs
sglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepksc

    Sequence, based on observed residues (ATOM records): (download) 
    >5bk5B (B:)
evqllesggglvqpggslrlscaasgffssyamswvrqapgkglewvsviysggsstyya
dsvkgrftisrdnskntlylqmnslraedtavyycttllilesdvgvdywgqgtlvtvss
astkgpsvfplapsskstaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglys
lssvvtvpssslgtqtyicnvnhkpsntkvdkkvep

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5bk5C (C:)
divmtqsplslpvtpgepasiscrssqsllhsngynyldwylqkpgqspqlliylgsnra
sgvpdrfsgsgsgtdftlkisrveaedvgvyycmqalqtpytfgqgtkleikrtvaapsv
fifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysl
sstltlskadyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records): (download) 
    >5bk5C (C:)
divmtqsplslpvtpgepasiscrssqsllhsngynyldwylqkpgqspqlliylgsnra
sgvpdrfsgsgsgtdftlkisrveaedvgvyycmqalqtpytfgqgtkleikrtvaapsv
fifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysl
sstltlskadyekhkvyacevthqglsspvtksfnrg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5bk5D (D:)
evqllesggglvqpggslrlscaasgftfssyamswvrqapgkglewvsviysggsstyy
adsvkgrftisrdnskntlylqmnslraedtavyycttllilesdvgvdywgqgtlvtvs
sastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqs
sglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepksc

    Sequence, based on observed residues (ATOM records): (download) 
    >5bk5D (D:)
evqllesggglvqpggslrlscaasgftfssyamswvrqapgkglewvsviysggsstyy
adsvkgrftisrdnskntlylqmnslraedtavyycttllilesdvgvdywgqgtlvtvs
sastkgpsvfplaptaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglyslss
vvtvpssslgtqtyicnvnhkpsntkvdkkvep

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5bk5E (E:)
divmtqsplslpvtpgepasiscrssqsllhsngynyldwylqkpgqspqlliylgsnra
sgvpdrfsgsgsgtdftlkisrveaedvgvyycmqalqtpytfgqgtkleikrtvaapsv
fifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysl
sstltlskadyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records): (download) 
    >5bk5E (E:)
divmtqsplslpvtpgepasiscrssqsllhsnynyldwylqkpgqspqlliylgsnras
gvpdrfsgsgsgtdftlkisrveaedvgvyycmqalqtpytfgqgtkleikrtvapsvfi
fppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslss
tltlskadyekhkvyacevthqglsspvtksfnrgec

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5bk5F (F:)
evqllesggglvqpggslrlscaasgftfssyamswvrqapgkglewvsviysggsstyy
adsvkgrftisrdnskntlylqmnslraedtavyycttllilesdvgvdywgqgtlvtvs
sastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqs
sglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepksc

    Sequence, based on observed residues (ATOM records): (download) 
    >5bk5F (F:)
evqllesggglvqpggslrlscaasgtfssyamswvrqapgkglewvsviysggsstyya
dsvkgrftisrdnskntlylqmnslraedtavyycttllilesdvgvdywgqgtlvtvss
astkgpsvfplapstaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglyslss
vvtvpssslgtqtyicnvnhkpsntkvdkkvep

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5bk5G (G:)
divmtqsplslpvtpgepasiscrssqsllhsngynyldwylqkpgqspqlliylgsnra
sgvpdrfsgsgsgtdftlkisrveaedvgvyycmqalqtpytfgqgtkleikrtvaapsv
fifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysl
sstltlskadyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records): (download) 
    >5bk5G (G:)
divmtqsplslpvtpgepasiscrssqsllhsngynyldwylqkpgqspqlliylgsnra
sgvpdrfsgsgsgtdftlkisrveaedvgvyycmqalqtpytfgqgtkleikrtvaapsv
fifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysl
sstltlskadyekhkvyacevthqglsspvtksfnrg

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5bk5H (H:)
evqllesggglvqpggslrlscaasgftfssyamswvrqapgkglewvsviysggsstyy
adsvkgrftisrdnskntlylqmnslraedtavyycttllilesdvgvdywgqgtlvtvs
sastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqs
sglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepksc

    Sequence, based on observed residues (ATOM records): (download) 
    >5bk5H (H:)
evqllesggglvqpggslrlscaasfssyamswvrqapgkglewvsviysggsstyyads
vkgrftisrdnskntlylqmnslraedtavyycttllilesdvgvdywgqgtlvtvssas
tkgpsvfplapgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglyslssvv
tvpssslgtqtyicnvnhkpsntkvdkkvep