PDB entry 5b8f

View 5b8f on RCSB PDB site
Description: X-ray Crystal Structure of a 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Pseudomonas aeruginosa
Class: lyase
Keywords: SSGCID, Psuedomonas aeruginosa, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, LYASE
Deposited on 2015-04-20, released 2015-05-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: XRAY
Resolution: 1.45 Å
R-factor: N/A
AEROSPACI score: 0.51 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
    Species: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) [TaxId:208964]
    Gene: ispF, PA3627
    Database cross-references and differences (RAF-indexed):
    • Uniprot P57708 (7-163)
      • expression tag (5-6)
    Domains in SCOPe 2.08: d5b8fa1, d5b8fa2
  • Chain 'B':
    Compound: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
    Species: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) [TaxId:208964]
    Gene: ispF, PA3627
    Database cross-references and differences (RAF-indexed):
    • Uniprot P57708 (7-163)
      • expression tag (6)
    Domains in SCOPe 2.08: d5b8fb1, d5b8fb2
  • Chain 'C':
    Compound: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
    Species: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) [TaxId:208964]
    Gene: ispF, PA3627
    Database cross-references and differences (RAF-indexed):
    • Uniprot P57708 (7-163)
      • expression tag (0-6)
    Domains in SCOPe 2.08: d5b8fc1, d5b8fc2
  • Heterogens: MG, C5P, MPD, PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5b8fA (A:)
ahhhhhhmrighgydvhrfgegdfitlggvriphkhglvahsdgdvllhalsdallgaaa
lgdigkhfpdtdprfkgadsrallrhvvaivaekgwkvgnvdativaqapkmaphietmr
gliaedlgvavdqvnvkattterlgftgreegiavhavallmar

    Sequence, based on observed residues (ATOM records): (download) 
    >5b8fA (A:)
hhmrighgydvhrfgegdfitlggvriphkhglvahsdgdvllhalsdallgaaalgdig
khfpdtdprfkgadsrallrhvvaivaekgwkvgnvdativaqapkmaphietmrgliae
dlgvavdqvnvkattterlgftgreegiavhavallmar

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5b8fB (B:)
ahhhhhhmrighgydvhrfgegdfitlggvriphkhglvahsdgdvllhalsdallgaaa
lgdigkhfpdtdprfkgadsrallrhvvaivaekgwkvgnvdativaqapkmaphietmr
gliaedlgvavdqvnvkattterlgftgreegiavhavallmar

    Sequence, based on observed residues (ATOM records): (download) 
    >5b8fB (B:)
hmrighgydvhrfgegdfitlggvriphkhglvahsdgdvllhalsdallgaaalgdigk
hfpdtdprfkgadsrallrhvvaivaekgwkvgnvdativaqapkmaphietmrgliaed
lgvavdqvnvkattterlgftgreegiavhavallmar

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5b8fC (C:)
ahhhhhhmrighgydvhrfgegdfitlggvriphkhglvahsdgdvllhalsdallgaaa
lgdigkhfpdtdprfkgadsrallrhvvaivaekgwkvgnvdativaqapkmaphietmr
gliaedlgvavdqvnvkattterlgftgreegiavhavallmar