PDB entry 5b1l
View 5b1l on RCSB PDB site
Description: The mouse nucleosome structure containing H3t
Class: structural protein/DNA
Keywords: chromatin, spermatogenesis, histone-fold, STRUCTURAL PROTEIN-DNA complex
Deposited on
2015-12-08, released
2017-02-15
The last revision prior to the SCOPe 2.06 freeze date was dated
2017-02-15, with a file datestamp of
2017-02-10.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: N/A
AEROSPACI score: 0.24
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Histone H3t
Species: Mus musculus [TaxId:10090]
Gene: Gm12260
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: histone h4
Species: Mus musculus [TaxId:10090]
Gene: Hist1h4a, Hist1h4b, H4-53, Hist1h4c, H4-12, Hist1h4d, Hist1h4f, Hist1h4h, Hist1h4i, Hist1h4j, Hist1h4k, Hist1h4m, Hist2h4a, Hist2h4, Hist4h4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5b1lb_ - Chain 'C':
Compound: Histone H2A type 1
Species: Mus musculus [TaxId:10090]
Gene: Hist1h2ab, Hist1h2ac, Hist1h2ad, Hist1h2ae, Hist1h2ag, Hist1h2ai, Hist1h2an, Hist1h2ao
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5b1lc_ - Chain 'D':
Compound: Histone H2B type 3-A
Species: Mus musculus [TaxId:10090]
Gene: Hist3h2ba
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5b1ld_ - Chain 'E':
Compound: Histone H3t
Species: Mus musculus [TaxId:10090]
Gene: Gm12260
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: histone h4
Species: Mus musculus [TaxId:10090]
Gene: Hist1h4a, Hist1h4b, H4-53, Hist1h4c, H4-12, Hist1h4d, Hist1h4f, Hist1h4h, Hist1h4i, Hist1h4j, Hist1h4k, Hist1h4m, Hist2h4a, Hist2h4, Hist4h4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5b1lf_ - Chain 'G':
Compound: Histone H2A type 1
Species: Mus musculus [TaxId:10090]
Gene: Hist1h2ab, Hist1h2ac, Hist1h2ad, Hist1h2ae, Hist1h2ag, Hist1h2ai, Hist1h2an, Hist1h2ao
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5b1lg_ - Chain 'H':
Compound: Histone H2B type 3-A
Species: Mus musculus [TaxId:10090]
Gene: Hist3h2ba
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5b1lh_ - Chain 'I':
Compound: DNA (146-mer)
Species: Homo sapiens [TaxId:9606]
- Chain 'J':
Compound: DNA (146-mer)
Species: Homo sapiens [TaxId:9606]
- Heterogens: CL, MN, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5b1lB (B:)
gshmsgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrg
vlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg
Sequence, based on observed residues (ATOM records): (download)
>5b1lB (B:)
niqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakrktvtam
dvvyalkrqgrtlygfgg
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5b1lC (C:)
gshmsgrgkqggkarakaktrssraglqfpvgrvhrllrkgnyservgagapvylaavle
yltaeilelagnaardnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavll
pkkteshhkakgk
Sequence, based on observed residues (ATOM records): (download)
>5b1lC (C:)
rakaktrssraglqfpvgrvhrllrkgnyservgagapvylaavleyltaeilelagnaa
rdnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5b1lD (D:)
gshmpepsrstpapkkgskkaitkaqkkdgkkrkrgrkesysiyvykvlkqvhpdtgiss
kamgimnsfvndiferiaseasrlahynkrstitsrevqtavrlllpgelakhavsegtk
avtkytssk
Sequence, based on observed residues (ATOM records): (download)
>5b1lD (D:)
grkesysiyvykvlkqvhpdtgisskamgimnsfvndiferiaseasrlahynkrstits
revqtavrlllpgelakhavsegtkavtkytss
- Chain 'E':
No sequence available.
- Chain 'F':
Sequence, based on SEQRES records: (download)
>5b1lF (F:)
gshmsgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrg
vlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg
Sequence, based on observed residues (ATOM records): (download)
>5b1lF (F:)
rkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakr
ktvtamdvvyalkrqgrtlygfgg
- Chain 'G':
Sequence, based on SEQRES records: (download)
>5b1lG (G:)
gshmsgrgkqggkarakaktrssraglqfpvgrvhrllrkgnyservgagapvylaavle
yltaeilelagnaardnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavll
pkkteshhkakgk
Sequence, based on observed residues (ATOM records): (download)
>5b1lG (G:)
ktrssraglqfpvgrvhrllrkgnyservgagapvylaavleyltaeilelagnaardnk
ktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk
- Chain 'H':
Sequence, based on SEQRES records: (download)
>5b1lH (H:)
gshmpepsrstpapkkgskkaitkaqkkdgkkrkrgrkesysiyvykvlkqvhpdtgiss
kamgimnsfvndiferiaseasrlahynkrstitsrevqtavrlllpgelakhavsegtk
avtkytssk
Sequence, based on observed residues (ATOM records): (download)
>5b1lH (H:)
rkesysiyvykvlkqvhpdtgisskamgimnsfvndiferiaseasrlahynkrstitsr
evqtavrlllpgelakhavsegtkavtkytss
- Chain 'I':
No sequence available.
- Chain 'J':
No sequence available.