PDB entry 5b0w

View 5b0w on RCSB PDB site
Description: Crystal structure of the 11-cis isomer of pharaonis halorhodopsin in the absence of halide ions
Class: membrane protein
Keywords: seven trans-membrane helices, retinylidene protein, light-driven chloride ion pump microbial rhodopsin, MEMBRANE PROTEIN
Deposited on 2015-11-11, released 2016-07-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-02.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: halorhodopsin
    Species: Natronomonas pharaonis DSM 2160 [TaxId:348780]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5b0wa_
  • Chain 'B':
    Compound: halorhodopsin
    Species: Natronomonas pharaonis DSM 2160 [TaxId:348780]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5b0wb_
  • Chain 'D':
    Compound: halorhodopsin
    Species: Natronomonas pharaonis DSM 2160 [TaxId:348780]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5b0wd_
  • Chain 'E':
    Compound: halorhodopsin
    Species: Natronomonas pharaonis DSM 2160 [TaxId:348780]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5b0we_
  • Chain 'F':
    Compound: halorhodopsin
    Species: Natronomonas pharaonis DSM 2160 [TaxId:348780]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5b0wf_
  • Chain 'G':
    Compound: halorhodopsin
    Species: Natronomonas pharaonis DSM 2160 [TaxId:348780]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5b0wg_
  • Heterogens: RET, 22B, L3P, BNG, ILE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5b0wA (A:)
mtetlppvtesavalqaevtqrelfefvlndpllasslyinialaglsillfvfmtrgld
dprakliavstilvpvvsiasytglasgltisvlempaghfaegssvmlggeevdgvvtm
wgryltwalstpmillalgllagsnatklftaitfdiamcvtglaaalttsshlmrwfwy
aiscacfivvlyillvewaqdakaagtadifstlklltvvmwlgypivwalgvegvavlp
vgytswaysaldivakyifaflllnyltsnegvvsgsildvpsasgapadd

    Sequence, based on observed residues (ATOM records): (download) 
    >5b0wA (A:)
evtqrelfefvlndpllasslyinialaglsillfvfmtrglddprakliavstilvpvv
siasytglasgltisvlempaghfaegssvmlggeevdgvvtmwgryltwalstpmilla
lgllagsnatklftaitfdiamcvtglaaalttsshlmrwfwyaiscacfivvlyillve
waqdakaagtadifstlklltvvmwlgypivwalgvegvavlpvgytswaysaldivaky
ifaflllnyltsnegvvsgsi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5b0wB (B:)
mtetlppvtesavalqaevtqrelfefvlndpllasslyinialaglsillfvfmtrgld
dprakliavstilvpvvsiasytglasgltisvlempaghfaegssvmlggeevdgvvtm
wgryltwalstpmillalgllagsnatklftaitfdiamcvtglaaalttsshlmrwfwy
aiscacfivvlyillvewaqdakaagtadifstlklltvvmwlgypivwalgvegvavlp
vgytswaysaldivakyifaflllnyltsnegvvsgsildvpsasgapadd

    Sequence, based on observed residues (ATOM records): (download) 
    >5b0wB (B:)
evtqrelfefvlndpllasslyinialaglsillfvfmtrglddprakliavstilvpvv
siasytglasgltisvlempaghfaegssvmlggeevdgvvtmwgryltwalstpmilla
lgllagsnatklftaitfdiamcvtglaaalttsshlmrwfwyaiscacfivvlyillve
waqdakaagtadifstlklltvvmwlgypivwalgvegvavlpvgytswaysaldivaky
ifaflllnyltsnegvvsgs

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5b0wD (D:)
mtetlppvtesavalqaevtqrelfefvlndpllasslyinialaglsillfvfmtrgld
dprakliavstilvpvvsiasytglasgltisvlempaghfaegssvmlggeevdgvvtm
wgryltwalstpmillalgllagsnatklftaitfdiamcvtglaaalttsshlmrwfwy
aiscacfivvlyillvewaqdakaagtadifstlklltvvmwlgypivwalgvegvavlp
vgytswaysaldivakyifaflllnyltsnegvvsgsildvpsasgapadd

    Sequence, based on observed residues (ATOM records): (download) 
    >5b0wD (D:)
evtqrelfefvlndpllasslyinialaglsillfvfmtrglddprakliavstilvpvv
siasytglasgltisvlempaghfaegssvmlggeevdgvvtmwgryltwalstpmilla
lgllagsnatklftaitfdiamcvtglaaalttsshlmrwfwyaiscacfivvlyillve
waqdakaagtadifstlklltvvmwlgypivwalgvegvavlpvgytswaysaldivaky
ifaflllnyltsnegvvsg

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5b0wE (E:)
mtetlppvtesavalqaevtqrelfefvlndpllasslyinialaglsillfvfmtrgld
dprakliavstilvpvvsiasytglasgltisvlempaghfaegssvmlggeevdgvvtm
wgryltwalstpmillalgllagsnatklftaitfdiamcvtglaaalttsshlmrwfwy
aiscacfivvlyillvewaqdakaagtadifstlklltvvmwlgypivwalgvegvavlp
vgytswaysaldivakyifaflllnyltsnegvvsgsildvpsasgapadd

    Sequence, based on observed residues (ATOM records): (download) 
    >5b0wE (E:)
evtqrelfefvlndpllasslyinialaglsillfvfmtrglddprakliavstilvpvv
siasytglasgltisvlempaghfaegssvmlggeevdgvvtmwgryltwalstpmilla
lgllagsnatklftaitfdiamcvtglaaalttsshlmrwfwyaiscacfivvlyillve
waqdakaagtadifstlklltvvmwlgypivwalgvegvavlpvgytswaysaldivaky
ifaflllnyltsnegvvsgs

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5b0wF (F:)
mtetlppvtesavalqaevtqrelfefvlndpllasslyinialaglsillfvfmtrgld
dprakliavstilvpvvsiasytglasgltisvlempaghfaegssvmlggeevdgvvtm
wgryltwalstpmillalgllagsnatklftaitfdiamcvtglaaalttsshlmrwfwy
aiscacfivvlyillvewaqdakaagtadifstlklltvvmwlgypivwalgvegvavlp
vgytswaysaldivakyifaflllnyltsnegvvsgsildvpsasgapadd

    Sequence, based on observed residues (ATOM records): (download) 
    >5b0wF (F:)
evtqrelfefvlndpllasslyinialaglsillfvfmtrglddprakliavstilvpvv
siasytglasgltisvlempaghfaegssvmlggeevdgvvtmwgryltwalstpmilla
lgllagsnatklftaitfdiamcvtglaaalttsshlmrwfwyaiscacfivvlyillve
waqdakaagtadifstlklltvvmwlgypivwalgvegvavlpvgytswaysaldivaky
ifaflllnyltsnegvvsgs

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5b0wG (G:)
mtetlppvtesavalqaevtqrelfefvlndpllasslyinialaglsillfvfmtrgld
dprakliavstilvpvvsiasytglasgltisvlempaghfaegssvmlggeevdgvvtm
wgryltwalstpmillalgllagsnatklftaitfdiamcvtglaaalttsshlmrwfwy
aiscacfivvlyillvewaqdakaagtadifstlklltvvmwlgypivwalgvegvavlp
vgytswaysaldivakyifaflllnyltsnegvvsgsildvpsasgapadd

    Sequence, based on observed residues (ATOM records): (download) 
    >5b0wG (G:)
evtqrelfefvlndpllasslyinialaglsillfvfmtrglddprakliavstilvpvv
siasytglasgltisvlempaghfaegssvmlggeevdgvvtmwgryltwalstpmilla
lgllagsnatklftaitfdiamcvtglaaalttsshlmrwfwyaiscacfivvlyillve
waqdakaagtadifstlklltvvmwlgypivwalgvegvavlpvgytswaysaldivaky
ifaflllnyltsnegvvsg