SCOPe 2.08: Structural Classification of Proteins

PDB entry 5avm

View 5avm on RCSB PDB site
Description: Crystal structures of 5-aminoimidazole ribonucleotide (AIR) synthetase, PurM, from Thermus thermophilus
Class: ligase
Keywords: PURINE BIOSYNTHESIS, ATP BINDING, Structural Genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, LIGASE
Deposited on 2015-06-23, released 2015-11-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-02-26, with a file datestamp of 2020-02-21.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: phosphoribosylformylglycinamidine cyclo-ligase
Species: Thermus thermophilus HB8 [TaxId:300852]
Gene: purM, TTHA0367
Database cross-references and differences (RAF-indexed):
- Uniprot Q5SLC6 (Start-332)
Domains in SCOPe 2.08: d5avma1, d5avma2
Chain 'B':
Compound: phosphoribosylformylglycinamidine cyclo-ligase
Species: Thermus thermophilus HB8 [TaxId:300852]
Gene: purM, TTHA0367
Database cross-references and differences (RAF-indexed):
- Uniprot Q5SLC6 (Start-332)
Domains in SCOPe 2.08: d5avmb1, d5avmb2
Chain 'C':
Compound: phosphoribosylformylglycinamidine cyclo-ligase
Species: Thermus thermophilus HB8 [TaxId:300852]
Gene: purM, TTHA0367
Database cross-references and differences (RAF-indexed):
- Uniprot Q5SLC6 (Start-332)
Domains in SCOPe 2.08: d5avmc1, d5avmc2
Chain 'D':
Compound: phosphoribosylformylglycinamidine cyclo-ligase
Species: Thermus thermophilus HB8 [TaxId:300852]
Gene: purM, TTHA0367
Database cross-references and differences (RAF-indexed):
- Uniprot Q5SLC6 (Start-332)
Domains in SCOPe 2.08: d5avmd1, d5avmd2
Chain 'E':
Compound: phosphoribosylformylglycinamidine cyclo-ligase
Species: Thermus thermophilus HB8 [TaxId:300852]
Gene: purM, TTHA0367
Database cross-references and differences (RAF-indexed):
- Uniprot Q5SLC6 (Start-332)
Domains in SCOPe 2.08: d5avme1, d5avme2
Chain 'F':
Compound: phosphoribosylformylglycinamidine cyclo-ligase
Species: Thermus thermophilus HB8 [TaxId:300852]
Gene: purM, TTHA0367
Database cross-references and differences (RAF-indexed):
- Uniprot Q5SLC6 (Start-332)
Domains in SCOPe 2.08: d5avmf1, d5avmf2
Chain 'G':
Compound: phosphoribosylformylglycinamidine cyclo-ligase
Species: Thermus thermophilus HB8 [TaxId:300852]
Gene: purM, TTHA0367
Database cross-references and differences (RAF-indexed):
- Uniprot Q5SLC6 (Start-332)
Domains in SCOPe 2.08: d5avmg1, d5avmg2
Chain 'H':
Compound: phosphoribosylformylglycinamidine cyclo-ligase
Species: Thermus thermophilus HB8 [TaxId:300852]
Gene: purM, TTHA0367
Database cross-references and differences (RAF-indexed):
- Uniprot Q5SLC6 (Start-332)
Domains in SCOPe 2.08: d5avmh1, d5avmh2
Heterogens: SO4, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>5avmA (A:)
mryeeagvhieakaealrrareaiaatytpevlrgmgafgglyaasrlkaleepvlvatt
dgvgtktllaleagdvsglgfdlvnhsvndllaqgaeplffldylaashldegvlaalla
slaeacrahgipllggetaempgvyregawdiagtlvgvversrilgpervregdallal
pssgphtngyslirkvvagqdlsapvpelgeslkeallrphraylkefrllweagvelha
aahitggglpenlpralppglgaevrrgswpippvfpylqrlggipeeemyrvfnmglgm
vlvlpqeaaeealklvegflvgrvvpgegvrlv