PDB entry 5ajm
View 5ajm on RCSB PDB site
Description: H5 (VN1194) Asn186Lys Mutant Haemagglutinin in Complex with Avian Receptor Analogue 3'SLN
Class: viral protein
Keywords: viral protein, haemagglutinin, haemagglutinin mutant, h5n1, influenza, sialic acid, glycoprotein, virus receptor, avian flu, sialyllactosamine, 3sln, 3'sln, 6sln, 6'sln, lsta
Deposited on
2015-02-25, released
2015-03-25
The last revision prior to the SCOPe 2.05 freeze date was dated
2015-03-25, with a file datestamp of
2015-03-20.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: N/A
AEROSPACI score: 0.22
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: haemagglutinin ha1
Species: INFLUENZA A VIRUS (A/VIETNAM/1194/2004(H5N1)) [TaxId:644788]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d5ajma_ - Chain 'B':
Compound: haemagglutinin ha2
Species: INFLUENZA A VIRUS (A/VIETNAM/1194/2004(H5N1)) [TaxId:644788]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d5ajmb_ - Heterogens: NAG, MPO, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5ajmA (A:)
dqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvagw
llgnpmcdefinvpewsyivekanpvndlcypgdfndyeelkhllsrinhfekiqiipks
swssheaslgvssacpyqgkssffrnvvwlikknstyptikrsynntnqedllvlwgihh
pkdaaeqtklyqnpttyisvgtstlnqrlvpriatrskvngqsgrmeffwtilkpndain
fesngnfiapeyaykivkkgdstimkseleygncntkcqtpmgainssmpfhnihpltig
ecpkyvksnrlvlatglrnspqretr
Sequence, based on observed residues (ATOM records): (download)
>5ajmA (A:)
dqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvagw
llgnpmcdefinvpewsyivekanpvndlcypgdfndyeelkhllsrinhfekiqiipks
swssheaslgvssacpyqgkssffrnvvwlikknstyptikrsynntnqedllvlwgihh
pkdaaeqtklyqnpttyisvgtstlnqrlvpriatrskvngqsgrmeffwtilkpndain
fesngnfiapeyaykivkkgdstimkseleygncntkcqtpmgainssmpfhnihpltig
ecpkyvksnrlvlatglrnsp
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5ajmB (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseea
Sequence, based on observed residues (ATOM records): (download)
>5ajmB (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqy