PDB entry 5abj

View 5abj on RCSB PDB site
Description: Structure of Coxsackievirus A16 in complex with GPP3
Class: virus
Keywords: virus, inhibitor
Deposited on 2015-08-06, released 2015-09-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2015-11-04, with a file datestamp of 2015-10-30.
Experiment type: XRAY
Resolution: 2.75 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vp1
    Species: Coxsackievirus A16 [TaxId:31704]
    Database cross-references and differences (RAF-indexed):
    • Uniprot I3W9E1 (Start-296)
      • conflict (239)
    Domains in SCOPe 2.08: d5abja_
  • Chain 'B':
    Compound: vp2
    Species: Coxsackievirus A16 [TaxId:31704]
    Database cross-references and differences (RAF-indexed):
    • Uniprot I3W9E1 (Start-253)
      • conflict (225)
    Domains in SCOPe 2.08: d5abjb_
  • Chain 'C':
    Compound: vp3
    Species: Coxsackievirus A16 [TaxId:31704]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5abjc_
  • Chain 'D':
    Compound: vp4
    Species: Coxsackievirus A16 [TaxId:31704]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: CL, YM2, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5abjA (A:)
gdpiadmidqtvnnqvnrsltalqvlptaanteasshrlgtgvvpalqaaetgassnasd
knlietrcvlnhhstqetaignffsraglvsiitmpttgtqntdgyvnwdidlmgyaqlr
rkcelftymrfdaeftfvvakpngelvpqllqymyvppgapkptsrdsfawqtatnpsvf
vkmtdppaqvsvpfmspasayqwfydgyptfgehlqandldygqcpnnmmgtfsirtvgt
eksphsitlrvymrikhvrawiprplrnqpylfktnpnykgndikctstsrdkittl

    Sequence, based on observed residues (ATOM records): (download) 
    >5abjA (A:)
dpiadmisltalqvlptaanteasshrlgtgvvpalqaaetgassnasdknlietrcvln
hhstqetaignffsraglvsiitmpttgtqntdgyvnwdidlmgyaqlrrkcelftymrf
daeftfvvakpngelvpqllqymyvppgapkptsrdsfawqtatnpsvfvkmtdppaqvs
vpfmspasayqwfydgyptfgehlqandldygqcpnnmmgtfsirtvgteksphsitlrv
ymrikhvrawiprplrnqpylfktnpnykgndikctstsrdkittl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5abjB (B:)
spsaeacgysdrvaqltignstittqeaaniviaygewpeycpdtdatavdkptrpdvsv
nrfftldtkswakdskgwywkfpdvltevgvfgqnaqfhylyrsgfcvhvqcnaskfhqg
allvavlpeyvlgtiaggtgnenshppyattqpgqvgavlthpyvldagiplsqltvcph
qwinlrtnncatiivpymntvpfdsalnhcnfgllvipvvpldfnagatseipitvtiap
mcaefaglrqavkq

    Sequence, based on observed residues (ATOM records): (download) 
    >5abjB (B:)
sdrvaqltignstittqeaaniviaygewpeycpdtdatavdkptrpdvsvnrfftldtk
swakdskgwywkfpdvltevgvfgqnaqfhylyrsgfcvhvqcnaskfhqgallvavlpe
yvlgtiaggtgnenshppyattqpgqvgavlthpyvldagiplsqltvcphqwinlrtnn
catiivpymntvpfdsalnhcnfgllvipvvpldfnagatseipitvtiapmcaefaglr
qavkq

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5abjC (C:)
giptelkpgtnqflttddgvsapilpgfhptppihipgevhnlleicrvetilevnnlkt
nettpmqrlcfpvsvqsktgelcaafradpgrdgpwqstilgqlcryytqwsgslevtfm
fagsfmatgkmliaytppggnvpadritamlgthviwdfglqssvtlvvpwisnthyrah
aragyfdyyttgiitiwyqtnyvvpigapttayivalaaaqdnftmklckdtedieqtan
iq

  • Chain 'D':
    No sequence available.