PDB entry 5a8w

View 5a8w on RCSB PDB site
Description: methyl-coenzyme m reductase II from methanothermobacter wolfeii at 1. 8 a resolution
Class: transferase
Keywords: transferase, post-translational modification, binding sites, coenzymes, disulfides, mesna, metalloporphyrins, methane, methanobacterium, nickel, oxidation-reduction, phosphothreonine
Deposited on 2015-07-17, released 2016-08-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-03-29, with a file datestamp of 2017-03-24.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: methyl-coenzyme m II reductase
    Species: METHANOTHERMOBACTER WOLFEII [TaxId:145261]
    Database cross-references and differences (RAF-indexed):
    • PDB 5A8W
  • Chain 'B':
    Compound: methyl-coenzyme m reductase II
    Species: METHANOTHERMOBACTER WOLFEII [TaxId:145261]
    Database cross-references and differences (RAF-indexed):
    • PDB 5A8W (Start-442)
  • Chain 'C':
    Compound: methyl-coenzyme m reductase II
    Species: METHANOTHERMOBACTER WOLFEII [TaxId:145261]
    Database cross-references and differences (RAF-indexed):
    • PDB 5A8W
    Domains in SCOPe 2.08: d5a8wc_
  • Chain 'D':
    Compound: methyl-coenzyme m II reductase
    Species: METHANOTHERMOBACTER WOLFEII [TaxId:145261]
    Database cross-references and differences (RAF-indexed):
    • PDB 5A8W
  • Chain 'E':
    Compound: methyl-coenzyme m reductase II
    Species: METHANOTHERMOBACTER WOLFEII [TaxId:145261]
    Database cross-references and differences (RAF-indexed):
    • PDB 5A8W (Start-442)
  • Chain 'F':
    Compound: methyl-coenzyme m reductase II
    Species: METHANOTHERMOBACTER WOLFEII [TaxId:145261]
    Database cross-references and differences (RAF-indexed):
    • PDB 5A8W
    Domains in SCOPe 2.08: d5a8wf_
  • Chain 'G':
    Compound: methyl-coenzyme m II reductase
    Species: METHANOTHERMOBACTER WOLFEII [TaxId:145261]
    Database cross-references and differences (RAF-indexed):
    • PDB 5A8W
  • Chain 'H':
    Compound: methyl-coenzyme m reductase II
    Species: METHANOTHERMOBACTER WOLFEII [TaxId:145261]
    Database cross-references and differences (RAF-indexed):
    • PDB 5A8W (Start-442)
  • Chain 'I':
    Compound: methyl-coenzyme m reductase II
    Species: METHANOTHERMOBACTER WOLFEII [TaxId:145261]
    Database cross-references and differences (RAF-indexed):
    • PDB 5A8W
    Domains in SCOPe 2.08: d5a8wi_
  • Chain 'J':
    Compound: methyl-coenzyme m II reductase
    Species: METHANOTHERMOBACTER WOLFEII [TaxId:145261]
    Database cross-references and differences (RAF-indexed):
    • PDB 5A8W
  • Chain 'K':
    Compound: methyl-coenzyme m reductase II
    Species: METHANOTHERMOBACTER WOLFEII [TaxId:145261]
    Database cross-references and differences (RAF-indexed):
    • PDB 5A8W (Start-442)
  • Chain 'L':
    Compound: methyl-coenzyme m reductase II
    Species: METHANOTHERMOBACTER WOLFEII [TaxId:145261]
    Database cross-references and differences (RAF-indexed):
    • PDB 5A8W
    Domains in SCOPe 2.08: d5a8wl_
  • Heterogens: COM, TP7, ACT, F43, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5a8wC (C:)
msykaqytpgetriaenrrkhmnpdyelrklreisdedlvkvlghrnpgesyksvhppld
emdfeedivrdlvepiqgakegvrvryiqfadsmynapaqpydrartymwryrgvdtgtl
sgrqviemreldlegvskelvetelfdpattgirgatvhghslrldenglmfdalqryvf
deetghvvyvkeqvgrpldepvdmgqpldeeelrkittiyrkdniamrddkeaievveni
htgrtmggfgmdvfkedlrkrlgdd

    Sequence, based on observed residues (ATOM records): (download) 
    >5a8wC (C:)
sykaqytpgetriaenrrkhmnpdyelrklreisdedlvkvlghrnpgesyksvhpplde
mdfeedivrdlvepiqgakegvrvryiqfadsmynapaqpydrartymwryrgvdtgtls
grqviemreldlegvskelvetelfdpattgirgatvhghslrldenglmfdalqryvfd
eetghvvyvkeqvgrpldepvdmgqpldeeelrkittiyrkdniamrddkeaievvenih
tgrtmggfgmdvfkedlrkrlgd

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5a8wF (F:)
msykaqytpgetriaenrrkhmnpdyelrklreisdedlvkvlghrnpgesyksvhppld
emdfeedivrdlvepiqgakegvrvryiqfadsmynapaqpydrartymwryrgvdtgtl
sgrqviemreldlegvskelvetelfdpattgirgatvhghslrldenglmfdalqryvf
deetghvvyvkeqvgrpldepvdmgqpldeeelrkittiyrkdniamrddkeaievveni
htgrtmggfgmdvfkedlrkrlgdd

    Sequence, based on observed residues (ATOM records): (download) 
    >5a8wF (F:)
sykaqytpgetriaenrrkhmnpdyelrklreisdedlvkvlghrnpgesyksvhpplde
mdfeedivrdlvepiqgakegvrvryiqfadsmynapaqpydrartymwryrgvdtgtls
grqviemreldlegvskelvetelfdpattgirgatvhghslrldenglmfdalqryvfd
eetghvvyvkeqvgrpldepvdmgqpldeeelrkittiyrkdniamrddkeaievvenih
tgrtmggfgmdvfkedlrkrlgd

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >5a8wI (I:)
msykaqytpgetriaenrrkhmnpdyelrklreisdedlvkvlghrnpgesyksvhppld
emdfeedivrdlvepiqgakegvrvryiqfadsmynapaqpydrartymwryrgvdtgtl
sgrqviemreldlegvskelvetelfdpattgirgatvhghslrldenglmfdalqryvf
deetghvvyvkeqvgrpldepvdmgqpldeeelrkittiyrkdniamrddkeaievveni
htgrtmggfgmdvfkedlrkrlgdd

    Sequence, based on observed residues (ATOM records): (download) 
    >5a8wI (I:)
sykaqytpgetriaenrrkhmnpdyelrklreisdedlvkvlghrnpgesyksvhpplde
mdfeedivrdlvepiqgakegvrvryiqfadsmynapaqpydrartymwryrgvdtgtls
grqviemreldlegvskelvetelfdpattgirgatvhghslrldenglmfdalqryvfd
eetghvvyvkeqvgrpldepvdmgqpldeeelrkittiyrkdniamrddkeaievvenih
tgrtmggfgmdvfkedlrkrlgd

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >5a8wL (L:)
msykaqytpgetriaenrrkhmnpdyelrklreisdedlvkvlghrnpgesyksvhppld
emdfeedivrdlvepiqgakegvrvryiqfadsmynapaqpydrartymwryrgvdtgtl
sgrqviemreldlegvskelvetelfdpattgirgatvhghslrldenglmfdalqryvf
deetghvvyvkeqvgrpldepvdmgqpldeeelrkittiyrkdniamrddkeaievveni
htgrtmggfgmdvfkedlrkrlgdd

    Sequence, based on observed residues (ATOM records): (download) 
    >5a8wL (L:)
sykaqytpgetriaenrrkhmnpdyelrklreisdedlvkvlghrnpgesyksvhpplde
mdfeedivrdlvepiqgakegvrvryiqfadsmynapaqpydrartymwryrgvdtgtls
grqviemreldlegvskelvetelfdpattgirgatvhghslrldenglmfdalqryvfd
eetghvvyvkeqvgrpldepvdmgqpldeeelrkittiyrkdniamrddkeaievvenih
tgrtmggfgmdvfkedlrkrlgd