PDB entry 5a8r

View 5a8r on RCSB PDB site
Description: methyl-coenzyme m reductase II from methanothermobacter marburgensis at 2.15 a resolution
Class: transferase
Keywords: transferase, post-translational modification, binding sites, catalysis, coenzymes, disulfides, hydrogen, hydrogen bonding, ligands, mesna, metalloporphyrins, methane, methanobacterium, models, molecular, nickel, oxidation-reduction, oxidoreductases, phosphothreonine, protein conformation, protein folding, protein structure
Deposited on 2015-07-16, released 2016-08-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-05-15, with a file datestamp of 2019-05-10.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: methyl-coenzyme m reductase II subunit alpha
    Species: METHANOTHERMOBACTER MARBURGENSIS [TaxId:145263]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: methyl-coenzyme m reductase II subunit gamma
    Species: METHANOTHERMOBACTER MARBURGENSIS [TaxId:145263]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: methyl-coenzyme m reductase II, subunit beta
    Species: METHANOTHERMOBACTER MARBURGENSIS [TaxId:145263]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5a8rc_
  • Chain 'D':
    Compound: methyl-coenzyme m reductase II subunit alpha
    Species: METHANOTHERMOBACTER MARBURGENSIS [TaxId:145263]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: methyl-coenzyme m reductase II subunit gamma
    Species: METHANOTHERMOBACTER MARBURGENSIS [TaxId:145263]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: methyl-coenzyme m reductase II, subunit beta
    Species: METHANOTHERMOBACTER MARBURGENSIS [TaxId:145263]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5a8rf_
  • Chain 'G':
    Compound: methyl-coenzyme m reductase II subunit alpha
    Species: METHANOTHERMOBACTER MARBURGENSIS [TaxId:145263]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: methyl-coenzyme m reductase II subunit gamma
    Species: METHANOTHERMOBACTER MARBURGENSIS [TaxId:145263]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: methyl-coenzyme m reductase II, subunit beta
    Species: METHANOTHERMOBACTER MARBURGENSIS [TaxId:145263]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5a8ri_
  • Chain 'J':
    Compound: methyl-coenzyme m reductase II subunit alpha
    Species: METHANOTHERMOBACTER MARBURGENSIS [TaxId:145263]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: methyl-coenzyme m reductase II subunit gamma
    Species: METHANOTHERMOBACTER MARBURGENSIS [TaxId:145263]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: methyl-coenzyme m reductase II, subunit beta
    Species: METHANOTHERMOBACTER MARBURGENSIS [TaxId:145263]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5a8rl_
  • Heterogens: COM, TP7, F43, K, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5a8rC (C:)
msykaqytpgetqiaenrrkhmdpdyefrklrevsdedlvkvlghrnpgesyksvhppld
emdfeedivrdmvepiqgakegvrvryiqfadsmynapaqpydrartymwryrgvdtgtl
sgrqviemreldlegvskelvetelfdpattgirgatvhghslrldenglmfdalqryvf
deekghvvyvkdqvgrpldepvdmgqplgedelkkittiyrkdniamrddkeaievveni
htgrtlggfgmdvfkddlrkrlgdd

    Sequence, based on observed residues (ATOM records): (download) 
    >5a8rC (C:)
ykaqytpgetqiaenrrkhmdpdyefrklrevsdedlvkvlghrnpgesyksvhppldem
dfeedivrdmvepiqgakegvrvryiqfadsmynapaqpydrartymwryrgvdtgtlsg
rqviemreldlegvskelvetelfdpattgirgatvhghslrldenglmfdalqryvfde
ekghvvyvkdqvgrpldepvdmgqplgedelkkittiyrkdniamrddkeaievveniht
grtlggfgmdvfkddlrkrlgd

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5a8rF (F:)
msykaqytpgetqiaenrrkhmdpdyefrklrevsdedlvkvlghrnpgesyksvhppld
emdfeedivrdmvepiqgakegvrvryiqfadsmynapaqpydrartymwryrgvdtgtl
sgrqviemreldlegvskelvetelfdpattgirgatvhghslrldenglmfdalqryvf
deekghvvyvkdqvgrpldepvdmgqplgedelkkittiyrkdniamrddkeaievveni
htgrtlggfgmdvfkddlrkrlgdd

    Sequence, based on observed residues (ATOM records): (download) 
    >5a8rF (F:)
ykaqytpgetqiaenrrkhmdpdyefrklrevsdedlvkvlghrnpgesyksvhppldem
dfeedivrdmvepiqgakegvrvryiqfadsmynapaqpydrartymwryrgvdtgtlsg
rqviemreldlegvskelvetelfdpattgirgatvhghslrldenglmfdalqryvfde
ekghvvyvkdqvgrpldepvdmgqplgedelkkittiyrkdniamrddkeaievveniht
grtlggfgmdvfkddlrkrlg

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >5a8rI (I:)
msykaqytpgetqiaenrrkhmdpdyefrklrevsdedlvkvlghrnpgesyksvhppld
emdfeedivrdmvepiqgakegvrvryiqfadsmynapaqpydrartymwryrgvdtgtl
sgrqviemreldlegvskelvetelfdpattgirgatvhghslrldenglmfdalqryvf
deekghvvyvkdqvgrpldepvdmgqplgedelkkittiyrkdniamrddkeaievveni
htgrtlggfgmdvfkddlrkrlgdd

    Sequence, based on observed residues (ATOM records): (download) 
    >5a8rI (I:)
sykaqytpgetqiaenrrkhmdpdyefrklrevsdedlvkvlghrnpgesyksvhpplde
mdfeedivrdmvepiqgakegvrvryiqfadsmynapaqpydrartymwryrgvdtgtls
grqviemreldlegvskelvetelfdpattgirgatvhghslrldenglmfdalqryvfd
eekghvvyvkdqvgrpldepvdmgqplgedelkkittiyrkdniamrddkeaievvenih
tgrtlggfgmdvfkddlrkrlg

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >5a8rL (L:)
msykaqytpgetqiaenrrkhmdpdyefrklrevsdedlvkvlghrnpgesyksvhppld
emdfeedivrdmvepiqgakegvrvryiqfadsmynapaqpydrartymwryrgvdtgtl
sgrqviemreldlegvskelvetelfdpattgirgatvhghslrldenglmfdalqryvf
deekghvvyvkdqvgrpldepvdmgqplgedelkkittiyrkdniamrddkeaievveni
htgrtlggfgmdvfkddlrkrlgdd

    Sequence, based on observed residues (ATOM records): (download) 
    >5a8rL (L:)
sykaqytpgetqiaenrrkhmdpdyefrklrevsdedlvkvlghrnpgesyksvhpplde
mdfeedivrdmvepiqgakegvrvryiqfadsmynapaqpydrartymwryrgvdtgtls
grqviemreldlegvskelvetelfdpattgirgatvhghslrldenglmfdalqryvfd
eekghvvyvkdqvgrpldepvdmgqplgedelkkittiyrkdniamrddkeaievvenih
tgrtlggfgmdvfkddlrkrlgd