PDB entry 5a8b

View 5a8b on RCSB PDB site
Description: Structure of a parallel dimer of the aureochrome 1a LOV domain from Phaeodactylum tricornutum
Class: unknown function
Keywords: unknown function, aureochrome 1, parallel lov dimer and flanking helix.
Deposited on 2015-07-14, released 2016-02-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-02-10, with a file datestamp of 2016-02-05.
Experiment type: XRAY
Resolution: 2.79 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ptaureo1a lov2 domain
    Species: PHAEODACTYLUM TRICORNUTUM [TaxId:2850]
    Database cross-references and differences (RAF-indexed):
    • PDB 5A8B
    Domains in SCOPe 2.08: d5a8ba_
  • Chain 'B':
    Compound: ptaureo1a lov2 domain
    Species: PHAEODACTYLUM TRICORNUTUM [TaxId:2850]
    Database cross-references and differences (RAF-indexed):
    • PDB 5A8B
    Domains in SCOPe 2.08: d5a8bb_
  • Chain 'C':
    Compound: ptaureo1a lov2 domain
    Species: PHAEODACTYLUM TRICORNUTUM [TaxId:2850]
    Database cross-references and differences (RAF-indexed):
    • PDB 5A8B
    Domains in SCOPe 2.08: d5a8bc1, d5a8bc2
  • Chain 'D':
    Compound: ptaureo1a lov2 domain
    Species: PHAEODACTYLUM TRICORNUTUM [TaxId:2850]
    Database cross-references and differences (RAF-indexed):
    • PDB 5A8B
    Domains in SCOPe 2.08: d5a8bd_
  • Heterogens: FMN, CL, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5a8bA (A:)
mgsshhhhhhssglvprgshmdfsfikalqtaqqnfvvtdpslpdnpivyasqgflnltg
ysldqilgrncrflqgpetdpkaverirkaieqgndmsvcllnyrvdgttfwnqffiaal
rdaggnvtnfvgvqckvsdqyaatvtkqqeeeeeaaandded

    Sequence, based on observed residues (ATOM records): (download) 
    >5a8bA (A:)
fsfikalqtaqqnfvvtdpslpdnpivyasqgflnltgysldqilgrncrflqgpetdpk
averirkaieqgndmsvcllnyrvdgttfwnqffiaalrdaggnvtnfvgvqckvsdqya
atvtkqqeeeee

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5a8bB (B:)
mgsshhhhhhssglvprgshmdfsfikalqtaqqnfvvtdpslpdnpivyasqgflnltg
ysldqilgrncrflqgpetdpkaverirkaieqgndmsvcllnyrvdgttfwnqffiaal
rdaggnvtnfvgvqckvsdqyaatvtkqqeeeeeaaandded

    Sequence, based on observed residues (ATOM records): (download) 
    >5a8bB (B:)
sfikalqtaqqnfvvtdpslpdnpivyasqgflnltgysldqilgrncrflqgpetdpka
verirkaieqgndmsvcllnyrvdgttfwnqffiaalrdaggnvtnfvgvqckvsdqyaa
tvtkqqeeeee

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5a8bC (C:)
mgsshhhhhhssglvprgshmdfsfikalqtaqqnfvvtdpslpdnpivyasqgflnltg
ysldqilgrncrflqgpetdpkaverirkaieqgndmsvcllnyrvdgttfwnqffiaal
rdaggnvtnfvgvqckvsdqyaatvtkqqeeeeeaaandded

    Sequence, based on observed residues (ATOM records): (download) 
    >5a8bC (C:)
prgshmdfsfikalqtaqqnfvvtdpslpdnpivyasqgflnltgysldqilgrncrflq
gpetdpkaverirkaieqgndmsvcllnyrvdgttfwnqffiaalrdaggnvtnfvgvqc
kvsdqyaatvtkqqeeeee

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5a8bD (D:)
mgsshhhhhhssglvprgshmdfsfikalqtaqqnfvvtdpslpdnpivyasqgflnltg
ysldqilgrncrflqgpetdpkaverirkaieqgndmsvcllnyrvdgttfwnqffiaal
rdaggnvtnfvgvqckvsdqyaatvtkqqeeeeeaaandded

    Sequence, based on observed residues (ATOM records): (download) 
    >5a8bD (D:)
sfikalqtaqqnfvvtdpslpdnpivyasqgflnltgysldqilgrncrflqgpetdpka
verirkaieqgndmsvcllnyrvdgttfwnqffiaalrdaggnvtnfvgvqckvsdqyaa
tvtkqqeeeee