PDB entry 5a2d

View 5a2d on RCSB PDB site
Description: crystal structure of betaine aldehyde dehydrogenase from spinach showing a thiohemiacetal with betaine aldehyde
Class: oxidoreductase
Keywords: oxidoreductase
Deposited on 2015-05-17, released 2016-02-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-02-20, with a file datestamp of 2019-02-15.
Experiment type: XRAY
Resolution: 1.98 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: betaine aldehyde dehydrogenase, chloroplastic
    Species: Spinacia oleracea [TaxId:3562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5a2da_
  • Chain 'B':
    Compound: betaine aldehyde dehydrogenase, chloroplastic
    Species: Spinacia oleracea [TaxId:3562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5a2db_
  • Chain 'C':
    Compound: betaine aldehyde dehydrogenase, chloroplastic
    Species: Spinacia oleracea [TaxId:3562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5a2dc_
  • Chain 'D':
    Compound: betaine aldehyde dehydrogenase, chloroplastic
    Species: Spinacia oleracea [TaxId:3562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5a2dd_
  • Heterogens: CHT, ETX, K, PG4, AE3, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5a2dA (A:)
mafpiparqlfidgewrepikknripvinpsteeiigdipaataedvevavvaarrafrr
nnwsatsgahratylraiaakitekkdhfvkletidsgkpfdeavldiddvascfeyfag
qaealdgkqkapvtlpmerfkshvlrqplgvvglispwnypllmatwkiapalaagctav
lkpselasvtclefgevcnevglppgvlniltglgpdagaplvshpdvdkiaftgssatg
skvmasaaqlvkpvtlelggkspivvfedvdidkvvewtifgcfwtngqicsatsrllvh
esiaaefvdklvkwtknikisdpfeegcrlgpviskgqydkimkfistaksegatilygg
srpehlkkgyyieptivtdistsmqiwkeevfgpvlcvktfssedeaialandteyglaa
avfsndlerceritkalevgavwvncsqpcfvqapwggikrsgfgrelgewgiqnylnik
qvtqdisdepwgwyksp

    Sequence, based on observed residues (ATOM records): (download) 
    >5a2dA (A:)
piparqlfidgewrepikknripvinpsteeiigdipaataedvevavvaarrafrrnnw
satsgahratylraiaakitekkdhfvkletidsgkpfdeavldiddvascfeyfagqae
aldgkqkapvtlpmerfkshvlrqplgvvglispwnypllmatwkiapalaagctavlkp
selasvtclefgevcnevglppgvlniltglgpdagaplvshpdvdkiaftgssatgskv
masaaqlvkpvtlelggkspivvfedvdidkvvewtifgcfwtngqicsatsrllvhesi
aaefvdklvkwtknikisdpfeegcrlgpviskgqydkimkfistaksegatilyggsrp
ehlkkgyyieptivtdistsmqiwkeevfgpvlcvktfssedeaialandteyglaaavf
sndlerceritkalevgavwvncsqpcfvqapwggikrsgfgrelgewgiqnylnikqvt
qdisdepwgwyks

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5a2dB (B:)
mafpiparqlfidgewrepikknripvinpsteeiigdipaataedvevavvaarrafrr
nnwsatsgahratylraiaakitekkdhfvkletidsgkpfdeavldiddvascfeyfag
qaealdgkqkapvtlpmerfkshvlrqplgvvglispwnypllmatwkiapalaagctav
lkpselasvtclefgevcnevglppgvlniltglgpdagaplvshpdvdkiaftgssatg
skvmasaaqlvkpvtlelggkspivvfedvdidkvvewtifgcfwtngqicsatsrllvh
esiaaefvdklvkwtknikisdpfeegcrlgpviskgqydkimkfistaksegatilygg
srpehlkkgyyieptivtdistsmqiwkeevfgpvlcvktfssedeaialandteyglaa
avfsndlerceritkalevgavwvncsqpcfvqapwggikrsgfgrelgewgiqnylnik
qvtqdisdepwgwyksp

    Sequence, based on observed residues (ATOM records): (download) 
    >5a2dB (B:)
piparqlfidgewrepikknripvinpsteeiigdipaataedvevavvaarrafrrnnw
satsgahratylraiaakitekkdhfvkletidsgkpfdeavldiddvascfeyfagqae
aldgkqkapvtlpmerfkshvlrqplgvvglispwnypllmatwkiapalaagctavlkp
selasvtclefgevcnevglppgvlniltglgpdagaplvshpdvdkiaftgssatgskv
masaaqlvkpvtlelggkspivvfedvdidkvvewtifgcfwtngqicsatsrllvhesi
aaefvdklvkwtknikisdpfeegcrlgpviskgqydkimkfistaksegatilyggsrp
ehlkkgyyieptivtdistsmqiwkeevfgpvlcvktfssedeaialandteyglaaavf
sndlerceritkalevgavwvncsqpcfvqapwggikrsgfgrelgewgiqnylnikqvt
qdisdepwgwyks

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5a2dC (C:)
mafpiparqlfidgewrepikknripvinpsteeiigdipaataedvevavvaarrafrr
nnwsatsgahratylraiaakitekkdhfvkletidsgkpfdeavldiddvascfeyfag
qaealdgkqkapvtlpmerfkshvlrqplgvvglispwnypllmatwkiapalaagctav
lkpselasvtclefgevcnevglppgvlniltglgpdagaplvshpdvdkiaftgssatg
skvmasaaqlvkpvtlelggkspivvfedvdidkvvewtifgcfwtngqicsatsrllvh
esiaaefvdklvkwtknikisdpfeegcrlgpviskgqydkimkfistaksegatilygg
srpehlkkgyyieptivtdistsmqiwkeevfgpvlcvktfssedeaialandteyglaa
avfsndlerceritkalevgavwvncsqpcfvqapwggikrsgfgrelgewgiqnylnik
qvtqdisdepwgwyksp

    Sequence, based on observed residues (ATOM records): (download) 
    >5a2dC (C:)
iparqlfidgewrepikknripvinpsteeiigdipaataedvevavvaarrafrrnnws
atsgahratylraiaakitekkdhfvkletidsgkpfdeavldiddvascfeyfagqaea
ldgkqkapvtlpmerfkshvlrqplgvvglispwnypllmatwkiapalaagctavlkps
elasvtclefgevcnevglppgvlniltglgpdagaplvshpdvdkiaftgssatgskvm
asaaqlvkpvtlelggkspivvfedvdidkvvewtifgcfwtngqicsatsrllvhesia
aefvdklvkwtknikisdpfeegcrlgpviskgqydkimkfistaksegatilyggsrpe
hlkkgyyieptivtdistsmqiwkeevfgpvlcvktfssedeaialandteyglaaavfs
ndlerceritkalevgavwvncsqpcfvqapwggikrsgfgrelgewgiqnylnikqvtq
disdepwgwyks

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5a2dD (D:)
mafpiparqlfidgewrepikknripvinpsteeiigdipaataedvevavvaarrafrr
nnwsatsgahratylraiaakitekkdhfvkletidsgkpfdeavldiddvascfeyfag
qaealdgkqkapvtlpmerfkshvlrqplgvvglispwnypllmatwkiapalaagctav
lkpselasvtclefgevcnevglppgvlniltglgpdagaplvshpdvdkiaftgssatg
skvmasaaqlvkpvtlelggkspivvfedvdidkvvewtifgcfwtngqicsatsrllvh
esiaaefvdklvkwtknikisdpfeegcrlgpviskgqydkimkfistaksegatilygg
srpehlkkgyyieptivtdistsmqiwkeevfgpvlcvktfssedeaialandteyglaa
avfsndlerceritkalevgavwvncsqpcfvqapwggikrsgfgrelgewgiqnylnik
qvtqdisdepwgwyksp

    Sequence, based on observed residues (ATOM records): (download) 
    >5a2dD (D:)
piparqlfidgewrepikknripvinpsteeiigdipaataedvevavvaarrafrrnnw
satsgahratylraiaakitekkdhfvkletidsgkpfdeavldiddvascfeyfagqae
aldgkqkapvtlpmerfkshvlrqplgvvglispwnypllmatwkiapalaagctavlkp
selasvtclefgevcnevglppgvlniltglgpdagaplvshpdvdkiaftgssatgskv
masaaqlvkpvtlelggkspivvfedvdidkvvewtifgcfwtngqicsatsrllvhesi
aaefvdklvkwtknikisdpfeegcrlgpviskgqydkimkfistaksegatilyggsrp
ehlkkgyyieptivtdistsmqiwkeevfgpvlcvktfssedeaialandteyglaaavf
sndlerceritkalevgavwvncsqpcfvqapwggikrsgfgrelgewgiqnylnikqvt
qdisdepwgwyks