PDB entry 5a1f

View 5a1f on RCSB PDB site
Description: Crystal structure of the catalytic domain of PLU1 in complex with N-oxalylglycine.
Class: oxidoreductase
Keywords: oxidoreductase, lysine-specific demethylase 5b
Deposited on 2015-04-29, released 2015-05-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-06-29, with a file datestamp of 2016-06-24.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: lysine-specific demethylase 5b, lysine-specific demethylase 5b
    Species: Homo sapiens [TaxId:9606]
    Gene: KDM5B, JARID1B, PLU1, RBBP2H1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UGL1
      • expression tag (0-1)
    Domains in SCOPe 2.08: d5a1fa1, d5a1fa2, d5a1fa3
  • Heterogens: ZN, OGA, MN, PO4, EPE, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5a1fA (A:)
smflpppecpvfepsweefadpfafihkirpiaeqtgickvrpppdwqppfacdvdklhf
tpriqrlneleaqtrvklardytlrtfgemadafksdyfnmpvhmvptelvekefwrlvs
tieedvtveygadiaskefgsgfpvrdgkiklspeeeeyldsgwnlnnmpvmeqsvlahi
tadicgmklpwlyvgmcfssfcwhiedhwsysinylhwgepktwygvpgyaaeqlenvmk
klapelfvsqpdllhqlvtimnpntlmthevpvyrtnqcagefvitfprayhsgfnqgfn
faeavnfctvdwlplgrqcvehyrllhrycvfshdemickmaskadvldvvvastvqkdm
aimiedekalretvrklgvidsermdfellpdderqcvkckttcfmsaiscsckpgllvc
lhhvkelcscppykyklryrytlddlypmmnalklraesynewalnvnealeaki

    Sequence, based on observed residues (ATOM records): (download) 
    >5a1fA (A:)
smflpppecpvfepsweefadpfafihkirpiaeqtgickvrpppdwqppfacdvdklhf
tpriqrlneleaqtrvrdytlrtfgemadafksdyfnmpvhmvptelvekefwrlvstie
edvtveygadiaskefgsgfpvrdspeeeeyldsgwnlnnmpvmeqsvlahitadicgmk
lpwlyvgmcfssfcwhiedhwsysinylhwgepktwygvpgyaaeqlenvmkklapelfv
sqpdllhqlvtimnpntlmthevpvyrtnqcagefvitfprayhsgfnqgfnfaeavnfc
tvdwlplgrqcvehyrllhrycvfshdemickmaskadvldvvvastvqkdmaimiedek
alretvrklgvidsermdfellpdderqcvkckttcfmsaiscsckpgllvclhhvkelc
scppykyklryrytlddlypmmnalklrae