PDB entry 4z1a
View 4z1a on RCSB PDB site
Description: Structure of apo form KDO8PS from H.pylori
Class: transferase
Keywords: Helicobacter pylori, lipopolysaccharide biosynthesis, apo, Transferase
Deposited on
2015-03-27, released
2016-03-09
The last revision prior to the SCOPe 2.06 freeze date was dated
2016-03-09, with a file datestamp of
2016-03-04.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.31
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: 2-dehydro-3-deoxyphosphooctonate aldolase
Species: Helicobacter pylori (strain ATCC 700392 / 26695) [TaxId:85962]
Gene: kdsA, HP_0003
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4z1aa_ - Chain 'B':
Compound: 2-dehydro-3-deoxyphosphooctonate aldolase
Species: Helicobacter pylori (strain ATCC 700392 / 26695) [TaxId:85962]
Gene: kdsA, HP_0003
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4z1ab_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4z1aA (A:)
mktsktktpksvliagpcvieslenlrsiatklqplannerldfyfkasfdkanrtsles
yrgpglekglemlqtikeefgykiltdvhesyqasvaakvadilqipaflcrqtdlivev
sqtnaivnikkgqfmnpkdmqysvlkalktrdksiqsptyetalkngvwlcergssfgyg
nlvvdmrslkimrefapvifdathsvqmpggangkssgdssfapilaraaaavgidglfa
ethvdpknalsdganmlkpdeleqlvtdmlkiqnlf
Sequence, based on observed residues (ATOM records): (download)
>4z1aA (A:)
ksvliagpcvieslenlrsiatklqplannerldfyfkasfdkanrtslesyrgpglekg
lemlqtikeefgykiltdvhesyqasvaakvadilqipaflcrqtdlivevsqtnaivni
kkgqfmnpkdmqysvlkalktrdksiqsptyetalkngvwlcergssfgygnlvvdmrsl
kimrefapvifdathsvqmpggdssfapilaraaaavgidglfaethvdpknalsdganm
lkpdeleqlvtdmlkiqnlf
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4z1aB (B:)
mktsktktpksvliagpcvieslenlrsiatklqplannerldfyfkasfdkanrtsles
yrgpglekglemlqtikeefgykiltdvhesyqasvaakvadilqipaflcrqtdlivev
sqtnaivnikkgqfmnpkdmqysvlkalktrdksiqsptyetalkngvwlcergssfgyg
nlvvdmrslkimrefapvifdathsvqmpggangkssgdssfapilaraaaavgidglfa
ethvdpknalsdganmlkpdeleqlvtdmlkiqnlf
Sequence, based on observed residues (ATOM records): (download)
>4z1aB (B:)
ksvliagpcvieslenlrsiatklqplannerldfyfkasfdkanrtslesyrgpglekg
lemlqtikeefgykiltdvhesyqasvaakvadilqipaflcrqtdlivevsqtnaivni
kkgqfmnpkdmqysvlkalktrdksiqsptyetalkngvwlcergssfgygnlvvdmrsl
kimrefapvifdathsvqmpggdssfapilaraaaavgidglfaethvdpknalsdganm
lkpdeleqlvtdmlkiqnlf