PDB entry 4ytn

View 4ytn on RCSB PDB site
Description: Crystal structure of Mitochondrial rhodoquinol-fumarate reductase from Ascaris suum with N-[3-(pentafluorophenoxy)phenyl]-2-(trifluoromethyl)benzamide
Class: oxidoreductase/oxidoreductase inhibitor
Keywords: OXIDOREDUCTASE, rhodoquinol-fumarate reductase, Complex II, Inhibitor, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR complex
Deposited on 2015-03-18, released 2015-08-05
The last revision prior to the SCOPe 2.07 freeze date was dated 2015-08-05, with a file datestamp of 2015-07-31.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Succinate dehydrogenase flavoprotein
    Species: Ascaris suum [TaxId:6253]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial
    Species: Ascaris suum [TaxId:6253]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4ytnb1, d4ytnb2
  • Chain 'C':
    Compound: Cytochrome b-large subunit
    Species: Ascaris suum [TaxId:6253]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial
    Species: Ascaris suum [TaxId:6253]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Succinate dehydrogenase flavoprotein
    Species: Ascaris suum [TaxId:6253]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial
    Species: Ascaris suum [TaxId:6253]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4ytnf1, d4ytnf2
  • Chain 'G':
    Compound: Cytochrome b-large subunit
    Species: Ascaris suum [TaxId:6253]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial
    Species: Ascaris suum [TaxId:6253]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MLI, FAD, FES, SF4, F3S, HEM, FD8, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4ytnB (B:)
    mlrgstsvcrslelvtqaaryasaataaaptgkriktfeiyrfnpeepgakpklqkfdvd
    ldkcgtmvldalikiknevdptltfrrscregicgscamniagentlacicnidqntskt
    tkiyplphmfvikdlvpdmnlfyaqyasiqpwlqkktkinlgekqqyqsikeqekldgly
    ecilcaccsascpsywwnadkylgpavlmqayrwiidsrddsaaerlarmqdgfsafkch
    timnctktcpkhlnparaigeikmlltkmktkpaplptpanf
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ytnB (B:)
    kriktfeiyrfnpeepgakpklqkfdvdldkcgtmvldalikiknevdptltfrrscreg
    icgscamniagentlacicnidqntskttkiyplphmfvikdlvpdmnlfyaqyasiqpw
    lqkktkinlgekqqyqsikeqekldglyecilcaccsascpsywwnadkylgpavlmqay
    rwiidsrddsaaerlarmqdgfsafkchtimnctktcpkhlnparaigeikmlltkmktk
    paplptpanf
    

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >4ytnF (F:)
    mlrgstsvcrslelvtqaaryasaataaaptgkriktfeiyrfnpeepgakpklqkfdvd
    ldkcgtmvldalikiknevdptltfrrscregicgscamniagentlacicnidqntskt
    tkiyplphmfvikdlvpdmnlfyaqyasiqpwlqkktkinlgekqqyqsikeqekldgly
    ecilcaccsascpsywwnadkylgpavlmqayrwiidsrddsaaerlarmqdgfsafkch
    timnctktcpkhlnparaigeikmlltkmktkpaplptpanf
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ytnF (F:)
    kriktfeiyrfnpeepgakpklqkfdvdldkcgtmvldalikiknevdptltfrrscreg
    icgscamniagentlacicnidqntskttkiyplphmfvikdlvpdmnlfyaqyasiqpw
    lqkktkinlgekqqyqsikeqekldglyecilcaccsascpsywwnadkylgpavlmqay
    rwiidsrddsaaerlarmqdgfsafkchtimnctktcpkhlnparaigeikmlltkmktk
    paplptpanf
    

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.