PDB entry 4ysn

View 4ysn on RCSB PDB site
Description: Structure of aminoacid racemase in complex with PLP
Class: isomerase
Keywords: fold type I of PLP-dependent enzyme, ISOMERASE
Deposited on 2015-03-17, released 2016-04-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-05-17, with a file datestamp of 2017-05-12.
Experiment type: XRAY
Resolution: 1.94 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative 4-aminobutyrate aminotransferase
    Species: Lactobacillus buchneri [TaxId:1581]
    Database cross-references and differences (RAF-indexed):
    • Uniprot M1GRN3 (12-End)
      • expression tag (8-11)
    Domains in SCOPe 2.08: d4ysna1, d4ysna2
  • Chain 'B':
    Compound: Putative 4-aminobutyrate aminotransferase
    Species: Lactobacillus buchneri [TaxId:1581]
    Database cross-references and differences (RAF-indexed):
    • Uniprot M1GRN3 (12-End)
      • expression tag (10-11)
    Domains in SCOPe 2.08: d4ysnb1, d4ysnb2
  • Chain 'C':
    Compound: Putative 4-aminobutyrate aminotransferase
    Species: Lactobacillus buchneri [TaxId:1581]
    Database cross-references and differences (RAF-indexed):
    • Uniprot M1GRN3 (12-End)
      • expression tag (5-11)
    Domains in SCOPe 2.08: d4ysnc1, d4ysnc2
  • Chain 'D':
    Compound: Putative 4-aminobutyrate aminotransferase
    Species: Lactobacillus buchneri [TaxId:1581]
    Database cross-references and differences (RAF-indexed):
    • Uniprot M1GRN3 (12-End)
      • expression tag (10-11)
    Domains in SCOPe 2.08: d4ysnd1, d4ysnd2
  • Heterogens: PLP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ysnA (A:)
gsggiegrhmelmgkldkasklideenkyyarsarinyynlvidhahgatlvdvdgnkyi
dllasasainvghthekvvkaiadqaqklihytpayfhhvpgmelseklakiapgnspkm
vsfgnsgsdandaiikfaraytgrqyivsymgsyhgstygsqtlsgsslnmtrkigpmlp
svvhvpypdsyrtypgetehdvslryfnefkkpfesflpadetacvliepiqgdggiika
peeymqlvykfchehgilfaidevnqglgrtgkmwaiqqfkdiepdlmsvgkslasgmpl
savigkkevmqsldapahlfttagnpvcsaaslatldvieyeglveksatdgayakqrfl
emqqrhpmigdvrmwglnggielvkdpktkepdsdaatkviyyafahgvviitlagnilr
fqpplvipreqldqalqvlddaftavengevtipkdtgkigw

    Sequence, based on observed residues (ATOM records): (download) 
    >4ysnA (A:)
hmelmgkldkasklideenkyyarsarinyynlvidhahgatlvdvdgnkyidllasasa
invghthekvvkaiadqaqklihytpayfhhvpgmelseklakiapgnspkmvsfgnsgs
dandaiikfaraytgrqyivsymgsyhgstygsqtlsgsslnmtrkigpmlpsvvhvpyp
dsyrtypgetehdvslryfnefkkpfesflpadetacvliepiqgdggiikapeeymqlv
ykfchehgilfaidevnqglgrtgkmwaiqqfkdiepdlmsvgkslasgmplsavigkke
vmqsldapahlfttagnpvcsaaslatldvieyeglveksatdgayakqrflemqqrhpm
igdvrmwglnggielvkdpktkepdsdaatkviyyafahgvviitlagnilrfqpplvip
reqldqalqvlddaftavengevtip

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4ysnB (B:)
gsggiegrhmelmgkldkasklideenkyyarsarinyynlvidhahgatlvdvdgnkyi
dllasasainvghthekvvkaiadqaqklihytpayfhhvpgmelseklakiapgnspkm
vsfgnsgsdandaiikfaraytgrqyivsymgsyhgstygsqtlsgsslnmtrkigpmlp
svvhvpypdsyrtypgetehdvslryfnefkkpfesflpadetacvliepiqgdggiika
peeymqlvykfchehgilfaidevnqglgrtgkmwaiqqfkdiepdlmsvgkslasgmpl
savigkkevmqsldapahlfttagnpvcsaaslatldvieyeglveksatdgayakqrfl
emqqrhpmigdvrmwglnggielvkdpktkepdsdaatkviyyafahgvviitlagnilr
fqpplvipreqldqalqvlddaftavengevtipkdtgkigw

    Sequence, based on observed residues (ATOM records): (download) 
    >4ysnB (B:)
elmgkldkasklideenkyyarsarinyynlvidhahgatlvdvdgnkyidllasasain
vghthekvvkaiadqaqklihytpayfhhvpgmelseklakiapgnspkmvsfgnsgsda
ndaiikfaraytgrqyivsymgsyhgstygsqtlsgsslnmtrkigpmlpsvvhvpypds
yrtypgetehdvslryfnefkkpfesflpadetacvliepiqgdggiikapeeymqlvyk
fchehgilfaidevnqglgrtgkmwaiqqfkdiepdlmsvgkslasgmplsavigkkevm
qsldapahlfttagnpvcsaaslatldvieyeglveksatdgayakqrflemqqrhpmig
dvrmwglnggielvkdpktkepdsdaatkviyyafahgvviitlagnilrfqpplvipre
qldqalqvlddaftavengevti

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4ysnC (C:)
gsggiegrhmelmgkldkasklideenkyyarsarinyynlvidhahgatlvdvdgnkyi
dllasasainvghthekvvkaiadqaqklihytpayfhhvpgmelseklakiapgnspkm
vsfgnsgsdandaiikfaraytgrqyivsymgsyhgstygsqtlsgsslnmtrkigpmlp
svvhvpypdsyrtypgetehdvslryfnefkkpfesflpadetacvliepiqgdggiika
peeymqlvykfchehgilfaidevnqglgrtgkmwaiqqfkdiepdlmsvgkslasgmpl
savigkkevmqsldapahlfttagnpvcsaaslatldvieyeglveksatdgayakqrfl
emqqrhpmigdvrmwglnggielvkdpktkepdsdaatkviyyafahgvviitlagnilr
fqpplvipreqldqalqvlddaftavengevtipkdtgkigw

    Sequence, based on observed residues (ATOM records): (download) 
    >4ysnC (C:)
egrhmelmgkldkasklideenkyyarsarinyynlvidhahgatlvdvdgnkyidllas
asainvghthekvvkaiadqaqklihytpayfhhvpgmelseklakiapgnspkmvsfgn
sgsdandaiikfaraytgrqyivsymgsyhgstygsqtlsgsslnmtrkigpmlpsvvhv
pypdsyrtypgetehdvslryfnefkkpfesflpadetacvliepiqgdggiikapeeym
qlvykfchehgilfaidevnqglgrtgkmwaiqqfkdiepdlmsvgkslasgmplsavig
kkevmqsldapahlfttagnpvcsaaslatldvieyeglveksatdgayakqrflemqqr
hpmigdvrmwglnggielvkdpktkepdsdaatkviyyafahgvviitlagnilrfqppl
vipreqldqalqvlddaftavengevti

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4ysnD (D:)
gsggiegrhmelmgkldkasklideenkyyarsarinyynlvidhahgatlvdvdgnkyi
dllasasainvghthekvvkaiadqaqklihytpayfhhvpgmelseklakiapgnspkm
vsfgnsgsdandaiikfaraytgrqyivsymgsyhgstygsqtlsgsslnmtrkigpmlp
svvhvpypdsyrtypgetehdvslryfnefkkpfesflpadetacvliepiqgdggiika
peeymqlvykfchehgilfaidevnqglgrtgkmwaiqqfkdiepdlmsvgkslasgmpl
savigkkevmqsldapahlfttagnpvcsaaslatldvieyeglveksatdgayakqrfl
emqqrhpmigdvrmwglnggielvkdpktkepdsdaatkviyyafahgvviitlagnilr
fqpplvipreqldqalqvlddaftavengevtipkdtgkigw

    Sequence, based on observed residues (ATOM records): (download) 
    >4ysnD (D:)
elmgkldkasklideenkyyarsarinyynlvidhahgatlvdvdgnkyidllasasain
vghthekvvkaiadqaqklihytpayfhhvpgmelseklakiapgnspkmvsfgnsgsda
ndaiikfaraytgrqyivsymgsyhgstygsqtlsgsslnmtrkigpmlpsvvhvpypds
yrtypgetehdvslryfnefkkpfesflpadetacvliepiqgdggiikapeeymqlvyk
fchehgilfaidevnqglgrtgkmwaiqqfkdiepdlmsvgkslasgmplsavigkkevm
qsldapahlfttagnpvcsaaslatldvieyeglveksatdgayakqrflemqqrhpmig
dvrmwglnggielvkdpktkepdsdaatkviyyafahgvviitlagnilrfqpplvipre
qldqalqvlddaftavengevt