PDB entry 4ymz

View 4ymz on RCSB PDB site
Description: DHAP bound Leptospira Interrogans Triosephosphate Isomerase (LiTIM)
Class: isomerase
Keywords: tim barrels, beta-alpha barrels, isomerase, dihydroxyacetone phosphate, glycolysis
Deposited on 2015-03-08, released 2016-03-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-04-20, with a file datestamp of 2016-04-15.
Experiment type: XRAY
Resolution: 1.87 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: triosephosphate isomerase
    Species: Leptospira interrogans serovar Icterohaemorrhagiae str. RGA [TaxId:1291351]
    Gene: LEP2GSC113_RS0110880
    Database cross-references and differences (RAF-indexed):
    • PDB 4YMZ (Start-250)
    Domains in SCOPe 2.08: d4ymza_
  • Chain 'B':
    Compound: triosephosphate isomerase
    Species: Leptospira interrogans serovar Icterohaemorrhagiae str. RGA [TaxId:1291351]
    Gene: LEP2GSC113_RS0110880
    Database cross-references and differences (RAF-indexed):
    • PDB 4YMZ (Start-250)
    Domains in SCOPe 2.08: d4ymzb_
  • Heterogens: 13P, SO4, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ymzA (A:)
marktiiagnwkmnlslkeavflahsirekipsiskdkvsmvfpstlhlenvskilegss
vivgaqncyhsglaaftgetspdqlkeigvkvvmvghserrqflgesnffcndkirfllk
neftvlycvgetlseresgktlevlssqireglkgidsvffsnlilayepvwaigtgkva
tpsqaqevhsfirkeisglfvgassisesisilyggsvkpdniqdllkekdidgglvgga
sqkissfaglf

    Sequence, based on observed residues (ATOM records): (download) 
    >4ymzA (A:)
arktiiagnwkmnlslkeavflahsirekipsiskdkvsmvfpstlhlenvskilegssv
ivgaqncyhsglaaftgetspdqlkeigvkvvmvghserrqflgesnffcndkirfllkn
eftvlycvgetlseresgktlevlssqireglkgidsvffsnlilayepvwaigtgkvat
psqaqevhsfirkeisglfvgassisesisilyggsvkpdniqdllkekdidgglvggas
qkissfaglf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4ymzB (B:)
marktiiagnwkmnlslkeavflahsirekipsiskdkvsmvfpstlhlenvskilegss
vivgaqncyhsglaaftgetspdqlkeigvkvvmvghserrqflgesnffcndkirfllk
neftvlycvgetlseresgktlevlssqireglkgidsvffsnlilayepvwaigtgkva
tpsqaqevhsfirkeisglfvgassisesisilyggsvkpdniqdllkekdidgglvgga
sqkissfaglf

    Sequence, based on observed residues (ATOM records): (download) 
    >4ymzB (B:)
arktiiagnwkmnlslkeavflahsirekipsiskdkvsmvfpstlhlenvskilegssv
ivgaqncyhsglaaftgetspdqlkeigvkvvmvghserrqflgesnffcndkirfllkn
eftvlycvgetlseresgktlevlssqireglkgidsvffsnlilayepvwaigtgkvat
psqaqevhsfirkeisglfvgassisesisilyggsvkpdniqdllkekdidgglvggas
qkissfaglf