PDB entry 4yly

View 4yly on RCSB PDB site
Description: Crystal structure of peptidyl-tRNA hydrolase from a Gram-positive bacterium, staphylococcus aureus at 2.25 angstrom resolution
Class: hydrolase
Keywords: hydrolase, Gram-positive
Deposited on 2015-03-06, released 2016-01-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-01-27, with a file datestamp of 2016-01-22.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Peptidyl-tRNA hydrolase
    Species: Staphylococcus aureus [TaxId:1280]
    Gene: PTH
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6YP15 (0-189)
      • expression tag (190-197)
    Domains in SCOPe 2.08: d4ylya1, d4ylya2
  • Chain 'B':
    Compound: Peptidyl-tRNA hydrolase
    Species: Staphylococcus aureus [TaxId:1280]
    Gene: PTH
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6YP15 (0-189)
      • expression tag (190-197)
    Domains in SCOPe 2.08: d4ylyb1, d4ylyb2
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >4ylyA (A:)
    mkcivglgnigkrfeltrhnigfevvdyileknnfsldkqkfkgaytiermngdkvlfie
    pmtmmnlsgeavapimdyynvnpedlivlyddldleqgqvrlrqkgsagghngmksiikm
    lgtdqfkririgvgrptngmtvpdyvlqrfsndemvtmekviehaaraiekfvetsrfdh
    vmnefngevklehhhhhh
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4ylyB (B:)
    mkcivglgnigkrfeltrhnigfevvdyileknnfsldkqkfkgaytiermngdkvlfie
    pmtmmnlsgeavapimdyynvnpedlivlyddldleqgqvrlrqkgsagghngmksiikm
    lgtdqfkririgvgrptngmtvpdyvlqrfsndemvtmekviehaaraiekfvetsrfdh
    vmnefngevklehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ylyB (B:)
    mkcivglgnigkrfeltrhnigfevvdyileknnfsldkqkfkgaytiermngdkvlfie
    pmtmmnlsgeavapimdyynvnpedlivlyddldleqgqvrlrqkgsagghngmksiikm
    lgtdqfkririgvgrpngmtvpdyvlqrfsndemvtmekviehaaraiekfvetsrfdhv
    mnefngevklehhhhhh