PDB entry 4yek
View 4yek on RCSB PDB site
Description: X-ray structure of the thymidine phosphorylase from Salmonella typhimurium in complex with thymidine
Class: transferase
Keywords: thymidine phosphorylase, nucleoside, metabolism, transferase
Deposited on
2015-02-24, released
2016-03-02
The last revision prior to the SCOPe 2.06 freeze date was dated
2016-03-09, with a file datestamp of
2016-03-04.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: N/A
AEROSPACI score: 0.19
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: thymidine phosphorylase
Species: Salmonella enterica subsp. enterica serovar Typhimurium [TaxId:90371]
Gene: deoA, STM4568
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4yeka1, d4yeka2, d4yeka3 - Chain 'B':
Compound: thymidine phosphorylase
Species: Salmonella enterica subsp. enterica serovar Typhimurium [TaxId:90371]
Gene: deoA, STM4568
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4yekb1, d4yekb2, d4yekb3 - Heterogens: SO4, THM, PGE, EDO, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>4yekA (A:)
mflaqeiirkkrdghalsdeeirffingirdntisegqiaalamtiffhdmtmpervslt
mamrdsgtvldwkslnlngpivdkhstggvgdvtslmlgpmvaacggyvpmisgrglght
ggtldkleaipgfdifpddnrfreiiqdvgvaiigqtsslapadkrfyatrditatvdsi
plitgsilakklaegldalvmdvkvgsgafmptyelsealaeaivgvangagvrttallt
dmnqvlassagnavevreavqfltgeyrnprlfdvtmalcvemlisgqlakddaearakl
qavldngkaaevfgrmvaaqkgpsdfvenydkylptamlskavyadtegfisamdtralg
mavvsmgggrrqasdtidysvgftdmarlgdsidgqrplavihakdeaswqeaakavkaa
iilddkapastpsvyrrite
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>4yekB (B:)
mflaqeiirkkrdghalsdeeirffingirdntisegqiaalamtiffhdmtmpervslt
mamrdsgtvldwkslnlngpivdkhstggvgdvtslmlgpmvaacggyvpmisgrglght
ggtldkleaipgfdifpddnrfreiiqdvgvaiigqtsslapadkrfyatrditatvdsi
plitgsilakklaegldalvmdvkvgsgafmptyelsealaeaivgvangagvrttallt
dmnqvlassagnavevreavqfltgeyrnprlfdvtmalcvemlisgqlakddaearakl
qavldngkaaevfgrmvaaqkgpsdfvenydkylptamlskavyadtegfisamdtralg
mavvsmgggrrqasdtidysvgftdmarlgdsidgqrplavihakdeaswqeaakavkaa
iilddkapastpsvyrrite