PDB entry 4y5y
View 4y5y on RCSB PDB site
Description: Diabody 330 complex with EpoR
Class: protein binding/immune system
Keywords: diabody complex, receptor, protein binding-immune system complex
Deposited on
2015-02-12, released
2015-03-18
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-11-01, with a file datestamp of
2017-10-27.
Experiment type: XRAY
Resolution: 2.85 Å
R-factor: N/A
AEROSPACI score: 0.16
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: diabody 330 VH domain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4y5ya_ - Chain 'B':
Compound: diabody 330 VL domain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4y5yb_ - Chain 'C':
Compound: erythropoietin receptor
Species: Homo sapiens [TaxId:9606]
Gene: EPOR
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4y5yc1, d4y5yc2 - Chain 'D':
Compound: diabody 330 VH domain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4y5yd_ - Chain 'E':
Compound: diabody 330 VL domain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4y5ye_ - Chain 'F':
Compound: erythropoietin receptor
Species: Homo sapiens [TaxId:9606]
Gene: EPOR
Database cross-references and differences (RAF-indexed):
- Uniprot P19235
- engineered mutation (49)
- engineered mutation (161)
- engineered mutation (220-221)
Domains in SCOPe 2.08: d4y5yf1, d4y5yf2 - Heterogens: GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4y5yA (A:)
hsafagsevqlvesggglvqpggslrlscavsgftfskywmtwvrqapgkglewvanikp
dgsekyyvesvkgrftisrdnaknsvylqmnsvraedtavyycarvsrggsfsdwgqgtl
vtvssggggs
Sequence, based on observed residues (ATOM records): (download)
>4y5yA (A:)
evqlvesggglvqpggslrlscavsgftfskywmtwvrqapgkglewvanikpdgsekyy
vesvkgrftisrdnaknsvylqmnsvraedtavyycarvsrggsfsdwgqgtlvtvss
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4y5yB (B:)
qsaltqppsasgspgqsvtisctgtssdvgaynyvswyqqhpgkapklmiyevarrpsgv
pdrfsgsksgntasltvsglqaedeadyycssyagsnnfavfgrgtkltvlaaaggg
Sequence, based on observed residues (ATOM records): (download)
>4y5yB (B:)
qsaltqppsasgspgqsvtisctgtssdvgaynyvswyqqhpgkapklmiyevarrpsgv
pdrfsgsksgntasltvsglqaedeadyycssyagsnnfavfgrgtkltvla
- Chain 'C':
Sequence, based on SEQRES records: (download)
>4y5yC (C:)
fagsadpkfeskaallaargpeellcfterledlvcfweeaasagvgpgqysfsyqlede
pwklcrlhqaptargavrfwcslptadtssfvplelrvtaasgapryhrvihinevvlld
apvglvarladesghvvlrwlpppetpmtshiryevdvsagqgagsvqrveilegrtecv
lsnlrgrtrytfavrarmaepsfggfwsawsepvslltpslddkekaaa
Sequence, based on observed residues (ATOM records): (download)
>4y5yC (C:)
pkfeskaallaargpeellcfterledlvcfweeapgqysfsyqledepwklcrlhqapt
aavrfwcslptadtssfvplelrvtaasgapryhrvihinevvlldapvglvarlahvvl
rwlpppetpmtshiryevdvsagagsvqrveilegrtecvlsnlrgrtrytfavrarmae
psfggfwsawsepvsllt
- Chain 'D':
Sequence, based on SEQRES records: (download)
>4y5yD (D:)
hsafagsevqlvesggglvqpggslrlscavsgftfskywmtwvrqapgkglewvanikp
dgsekyyvesvkgrftisrdnaknsvylqmnsvraedtavyycarvsrggsfsdwgqgtl
vtvssggggs
Sequence, based on observed residues (ATOM records): (download)
>4y5yD (D:)
evqlvesggglvqpggslrlscavsgftfskywmtwvrqapgkglewvanikpdgsekyy
vesvkgrftisrdnaknsvylqmnsvraedtavyycarvsrggsfsdwgqgtlvtvssg
- Chain 'E':
Sequence, based on SEQRES records: (download)
>4y5yE (E:)
qsaltqppsasgspgqsvtisctgtssdvgaynyvswyqqhpgkapklmiyevarrpsgv
pdrfsgsksgntasltvsglqaedeadyycssyagsnnfavfgrgtkltvlaaaggg
Sequence, based on observed residues (ATOM records): (download)
>4y5yE (E:)
qsaltqppsasgspgqsvtisctgtssdvgaynyvswyqqhpgkapklmiyevarrpsgv
pdrfsgsksgntasltvsglqaedeadyycssyagsnnfavfgrgtkltvla
- Chain 'F':
Sequence, based on SEQRES records: (download)
>4y5yF (F:)
fagsadpkfeskaallaargpeellcfterledlvcfweeaasagvgpgqysfsyqlede
pwklcrlhqaptargavrfwcslptadtssfvplelrvtaasgapryhrvihinevvlld
apvglvarladesghvvlrwlpppetpmtshiryevdvsagqgagsvqrveilegrtecv
lsnlrgrtrytfavrarmaepsfggfwsawsepvslltpslddkekaaa
Sequence, based on observed residues (ATOM records): (download)
>4y5yF (F:)
pkfeskaallaargpeellcfterledlvcfweeaapgqysfsyqledepwklcrlhqap
targavrfwcslptadtssfvplelrvtaasgapryhrvihinevvlldapvglvarlad
ghvvlrwlpppetpmtshiryevdvsagqgagsvqrveilegrtecvlsnlrgrtrytfa
vrarmaepsfggfwsawsepvslltpsld