PDB entry 4y1l

View 4y1l on RCSB PDB site
Description: Ubc9 Homodimer The Missing Link in Poly-SUMO Chain Formation
Class: ligase/nuclear protein
Keywords: UBC9, RWD, SUMOylation, Homodimer, SUMO, ligase-nuclear protein complex
Deposited on 2015-02-08, released 2015-05-06
The last revision prior to the SCOPe 2.06 freeze date was dated 2015-07-15, with a file datestamp of 2015-07-10.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: SUMO-conjugating enzyme UBC9
    Species: Homo sapiens [TaxId:9606]
    Gene: UBE2I, UBC9, UBCE9
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4y1la_
  • Chain 'B':
    Compound: SUMO-conjugating enzyme UBC9
    Species: Homo sapiens [TaxId:9606]
    Gene: UBE2I, UBC9, UBCE9
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4y1lb_
  • Chain 'C':
    Compound: RWD domain-containing protein 3
    Species: Homo sapiens [TaxId:9606]
    Gene: RWDD3, RSUME
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Y3V2 (0-111)
      • conflict (84)
      • conflict (107)
      • expression tag (112)
    Domains in SCOPe 2.06: d4y1lc1, d4y1lc2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4y1lA (A:)
msgialsrlaqerkawrkdhpfgfvavptknpdgtmnlmnwecaipgkkgtpwegglfkl
rmlfkddypssppkckfepplfhpnvypsgtvclsileedkdwrpaitikqillgiqell
nepniqdpaqaeaytiycqnrveyekrvraqakkfaps

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4y1lB (B:)
msgialsrlaqerkawrkdhpfgfvavptknpdgtmnlmnwecaipgkkgtpwegglfkl
rmlfkddypssppkckfepplfhpnvypsgtvclsileedkdwrpaitikqillgiqell
nepniqdpaqaeaytiycqnrveyekrvraqakkfaps

    Sequence, based on observed residues (ATOM records): (download) 
    >4y1lB (B:)
msgialsrlaqerkawrkdhpfgfvavptknpdgtmnlmnwecaipgkkgtpwegglfkl
rmlfkddypssppkckfepplfhpnvypsgtvclsileedkdwrpaitikqillgiqell
nepniqdpaqaeaytiycqnrveyekrvraqakkfap

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4y1lC (C:)
aepvqeelsvlaaifcrphewevlsrsetdgtvfrihtkaegfmdvdiplelvfhlpvny
psclpgisinseqltraqcvtvkeklleqaesllsepmvhelvlwiqenlrha

    Sequence, based on observed residues (ATOM records): (download) 
    >4y1lC (C:)
aepvqeelsvlaaifcrphewevlsrsetdgtvfrihtkaegfmplelvfhlpvnypscl
pgisinseqltraqcvtvkeklleqaesllsepmvhelvlwiqenlrha