PDB entry 4y0e

View 4y0e on RCSB PDB site
Description: X-ray Crystal Structure of a putative dioxygenase from Mycobacterium abscessus
Class: oxidoreductase
Keywords: oxidoreductase, dioxygenase, Mycobacterium abscessus, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID
Deposited on 2015-02-06, released 2015-11-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-11, with a file datestamp of 2019-12-06.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative dioxygenase
    Species: Mycobacterium abscessus [TaxId:561007]
    Gene: MAB_4209c
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4y0ea_
  • Chain 'B':
    Compound: Putative dioxygenase
    Species: Mycobacterium abscessus [TaxId:561007]
    Gene: MAB_4209c
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4y0eb_
  • Chain 'C':
    Compound: Putative dioxygenase
    Species: Mycobacterium abscessus [TaxId:561007]
    Gene: MAB_4209c
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4y0ec_
  • Chain 'D':
    Compound: Putative dioxygenase
    Species: Mycobacterium abscessus [TaxId:561007]
    Gene: MAB_4209c
    Database cross-references and differences (RAF-indexed):
    • Uniprot B1MIR1 (23-End)
      • expression tag (21-22)
    Domains in SCOPe 2.08: d4y0ed1, d4y0ed2
  • Chain 'E':
    Compound: Putative dioxygenase
    Species: Mycobacterium abscessus [TaxId:561007]
    Gene: MAB_4209c
    Database cross-references and differences (RAF-indexed):
    • Uniprot B1MIR1 (23-End)
      • expression tag (21-22)
    Domains in SCOPe 2.08: d4y0ee1, d4y0ee2
  • Chain 'F':
    Compound: Putative dioxygenase
    Species: Mycobacterium abscessus [TaxId:561007]
    Gene: MAB_4209c
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4y0ef_
  • Chain 'G':
    Compound: Putative dioxygenase
    Species: Mycobacterium abscessus [TaxId:561007]
    Gene: MAB_4209c
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4y0eg_
  • Chain 'H':
    Compound: Putative dioxygenase
    Species: Mycobacterium abscessus [TaxId:561007]
    Gene: MAB_4209c
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4y0eh_
  • Heterogens: FE, MPD, EPE, MRD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4y0eA (A:)
mahhhhhhmgtleaqtqgpgsmvtddqtrriyrdagitveklgehigarvngielrgdls
adrveairlalainkvlvfteqhhlddagqyafarllgeptlphptvrshgtellnlega
angwhtdvtfvdripkasvlrpvtlpsyggattwastvaayeqlpkplrslvddlwatht
nlydyassgasggvsaerraayyteftssryetvhpvvrvhpetgerslllgqfvksfqd
lpsaefaslfqllqaritklentfrwnwrlgdvaiwdnratqhygiadfgeqqrelhrvt
lagdvpvdvhgrrsqillgdashysgietpqrlelfaa

    Sequence, based on observed residues (ATOM records): (download) 
    >4y0eA (A:)
tddqtrriyrdagitveklgehigarvngielrgdlsadrveairlalainkvlvfteqh
hlddagqyafarllgeptlphptvrshgtellnlegaangwhtdvtfvdripkasvlrpv
tlpsyggattwastvaayeqlpkplrslvddlwathtnlyderraayyteftssryetvh
pvvrvhpetgerslllgqfvksfqdlpsaefaslfqllqaritklentfrwnwrlgdvai
wdnratqhygiadfgeqqrelhrvtlagdvpvdvhgrrsqillgdashysgietpqrlel
f

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4y0eB (B:)
mahhhhhhmgtleaqtqgpgsmvtddqtrriyrdagitveklgehigarvngielrgdls
adrveairlalainkvlvfteqhhlddagqyafarllgeptlphptvrshgtellnlega
angwhtdvtfvdripkasvlrpvtlpsyggattwastvaayeqlpkplrslvddlwatht
nlydyassgasggvsaerraayyteftssryetvhpvvrvhpetgerslllgqfvksfqd
lpsaefaslfqllqaritklentfrwnwrlgdvaiwdnratqhygiadfgeqqrelhrvt
lagdvpvdvhgrrsqillgdashysgietpqrlelfaa

    Sequence, based on observed residues (ATOM records): (download) 
    >4y0eB (B:)
tddqtrriyrdagitveklgehigarvngielrgdlsadrveairlalainkvlvfteqh
hlddagqyafarllgeptlphptvrshgtellnlegaangwhtdvtfvdripkasvlrpv
tlpsyggattwastvaayeqlpkplrslvddlwathtnlyaayyteftssryetvhpvvr
vhpetgerslllgqfvksfqdlpsaefaslfqllqaritklentfrwnwrlgdvaiwdnr
atqhygiadfgeqqrelhrvtlagdvpvdvhgrrsqillgdashysgietpqrlelf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4y0eC (C:)
mahhhhhhmgtleaqtqgpgsmvtddqtrriyrdagitveklgehigarvngielrgdls
adrveairlalainkvlvfteqhhlddagqyafarllgeptlphptvrshgtellnlega
angwhtdvtfvdripkasvlrpvtlpsyggattwastvaayeqlpkplrslvddlwatht
nlydyassgasggvsaerraayyteftssryetvhpvvrvhpetgerslllgqfvksfqd
lpsaefaslfqllqaritklentfrwnwrlgdvaiwdnratqhygiadfgeqqrelhrvt
lagdvpvdvhgrrsqillgdashysgietpqrlelfaa

    Sequence, based on observed residues (ATOM records): (download) 
    >4y0eC (C:)
tddqtrriyrdagitveklgehigarvngielrgdlsadrveairlalainkvlvfteqh
hlddagqyafarllgeptlphptvrshgtellnlegaangwhtdvtfvdripkasvlrpv
tlpsyggattwastvaayeqlpkplrslvddlwathtnlydsggvsaerraayyteftss
ryetvhpvvrvhpetgerslllgqfvksfqdlpsaefaslfqllqaritklentfrwnwr
lgdvaiwdnratqhygiadfgeqqrelhrvtlagdvpvdvhgrrsqillgdashysgiet
pqrl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4y0eD (D:)
mahhhhhhmgtleaqtqgpgsmvtddqtrriyrdagitveklgehigarvngielrgdls
adrveairlalainkvlvfteqhhlddagqyafarllgeptlphptvrshgtellnlega
angwhtdvtfvdripkasvlrpvtlpsyggattwastvaayeqlpkplrslvddlwatht
nlydyassgasggvsaerraayyteftssryetvhpvvrvhpetgerslllgqfvksfqd
lpsaefaslfqllqaritklentfrwnwrlgdvaiwdnratqhygiadfgeqqrelhrvt
lagdvpvdvhgrrsqillgdashysgietpqrlelfaa

    Sequence, based on observed residues (ATOM records): (download) 
    >4y0eD (D:)
mvtddqtrriyrdagitveklgehigarvngielrgdlsadrveairlalainkvlvfte
qhhlddagqyafarllgeptlphptvrshgtellnlegaangwhtdvtfvdripkasvlr
pvtlpsyggattwastvaayeqlpkplrslvddlwathtnlyayyteftssryetvhpvv
rvhpetgerslllgqfvksfqdlpsaefaslfqllqaritklentfrwnwrlgdvaiwdn
ratqhygiadfgeqqrelhrvtlagdvpvdvhgrrsqillgdashysgietpqrlelf

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4y0eE (E:)
mahhhhhhmgtleaqtqgpgsmvtddqtrriyrdagitveklgehigarvngielrgdls
adrveairlalainkvlvfteqhhlddagqyafarllgeptlphptvrshgtellnlega
angwhtdvtfvdripkasvlrpvtlpsyggattwastvaayeqlpkplrslvddlwatht
nlydyassgasggvsaerraayyteftssryetvhpvvrvhpetgerslllgqfvksfqd
lpsaefaslfqllqaritklentfrwnwrlgdvaiwdnratqhygiadfgeqqrelhrvt
lagdvpvdvhgrrsqillgdashysgietpqrlelfaa

    Sequence, based on observed residues (ATOM records): (download) 
    >4y0eE (E:)
mvtddqtrriyrdagitveklgehigarvngielrgdlsadrveairlalainkvlvfte
qhhlddagqyafarllgeptlphptvrshgtellnlegaangwhtdvtfvdripkasvlr
pvtlpsyggattwastvaayeqlpkplrslvddlwathtnlaayyteftssryetvhpvv
rvhpetgerslllgqfvksfqdlpsaefaslfqllqaritklentfrwnwrlgdvaiwdn
ratqhygiadfgeqqrelhrvtlagdvpvdvhgrrsqillgdashysgietpqrlelfa

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4y0eF (F:)
mahhhhhhmgtleaqtqgpgsmvtddqtrriyrdagitveklgehigarvngielrgdls
adrveairlalainkvlvfteqhhlddagqyafarllgeptlphptvrshgtellnlega
angwhtdvtfvdripkasvlrpvtlpsyggattwastvaayeqlpkplrslvddlwatht
nlydyassgasggvsaerraayyteftssryetvhpvvrvhpetgerslllgqfvksfqd
lpsaefaslfqllqaritklentfrwnwrlgdvaiwdnratqhygiadfgeqqrelhrvt
lagdvpvdvhgrrsqillgdashysgietpqrlelfaa

    Sequence, based on observed residues (ATOM records): (download) 
    >4y0eF (F:)
tddqtrriyrdagitveklgehigarvngielrgdlsadrveairlalainkvlvfteqh
hlddagqyafarllgeptlphptvrshgtellnlegaangwhtdvtfvdripkasvlrpv
tlpsyggattwastvaayeqlpkplrslvddlwathtnlydasggvsaerraayytefts
sryetvhpvvrvhpetgerslllgqfvksfqdlpsaefaslfqllqaritklentfrwnw
rlgdvaiwdnratqhygiadfgeqqrelhrvtlagdvpvdvhgrrsqillgdashysgie
tpqrl

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >4y0eG (G:)
mahhhhhhmgtleaqtqgpgsmvtddqtrriyrdagitveklgehigarvngielrgdls
adrveairlalainkvlvfteqhhlddagqyafarllgeptlphptvrshgtellnlega
angwhtdvtfvdripkasvlrpvtlpsyggattwastvaayeqlpkplrslvddlwatht
nlydyassgasggvsaerraayyteftssryetvhpvvrvhpetgerslllgqfvksfqd
lpsaefaslfqllqaritklentfrwnwrlgdvaiwdnratqhygiadfgeqqrelhrvt
lagdvpvdvhgrrsqillgdashysgietpqrlelfaa

    Sequence, based on observed residues (ATOM records): (download) 
    >4y0eG (G:)
tddqtrriyrdagitveklgehigarvngielrgdlsadrveairlalainkvlvfteqh
hlddagqyafarllgeptlphptvrshgtellnlegaangwhtdvtfvdripkasvlrpv
tlpsyggattwastvaayeqlpkplrslvddlwathtnlyaerraayyteftssryetvh
pvvrvhpetgerslllgqfvksfqdlpsaefaslfqllqaritklentfrwnwrlgdvai
wdnratqhygiadfgeqqrelhrvtlagdvpvdvhgrrsqillgdashysgietpqrlel
fa

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4y0eH (H:)
mahhhhhhmgtleaqtqgpgsmvtddqtrriyrdagitveklgehigarvngielrgdls
adrveairlalainkvlvfteqhhlddagqyafarllgeptlphptvrshgtellnlega
angwhtdvtfvdripkasvlrpvtlpsyggattwastvaayeqlpkplrslvddlwatht
nlydyassgasggvsaerraayyteftssryetvhpvvrvhpetgerslllgqfvksfqd
lpsaefaslfqllqaritklentfrwnwrlgdvaiwdnratqhygiadfgeqqrelhrvt
lagdvpvdvhgrrsqillgdashysgietpqrlelfaa

    Sequence, based on observed residues (ATOM records): (download) 
    >4y0eH (H:)
tddqtrriyrdagitveklgehigarvngielrgdlsadrveairlalainkvlvfteqh
hlddagqyafarllgeptlphptvrshgtellnlegaangwhtdvtfvdripkasvlrpv
tlpsyggattwastvaayeqlpkplrslvddlwathtnlydasggvsaerraayytefts
sryetvhpvvrvhpetgerslllgqfvksfqdlpsaefaslfqllqaritklentfrwnw
rlgdvaiwdnratqhygiadfgeqqrelhrvtlagdvpvdvhgrrsqillgdashysgie
tpqrlelf