PDB entry 4xnm

View 4xnm on RCSB PDB site
Description: Antibody Influenza H5 Complex
Class: Viral protein/Immune system
Keywords: Antibody, Influenza, Neutralization, Viral protein-Immune system complex
Deposited on 2015-01-15, released 2015-07-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.51 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: H5.3 Fab Light Chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4XNM (0-207)
    Domains in SCOPe 2.08: d4xnma1, d4xnma2
  • Chain 'B':
    Compound: H5.3 Fab Heavy Chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4XNM (0-End)
    Domains in SCOPe 2.08: d4xnmb1, d4xnmb2
  • Chain 'C':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:11320]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:11320]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: H5.3 Fab Heavy Chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4XNM (0-End)
    Domains in SCOPe 2.08: d4xnmh1, d4xnmh2
  • Chain 'L':
    Compound: H5.3 Fab Light Chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4XNM (0-207)
    Domains in SCOPe 2.08: d4xnml1, d4xnml2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4xnmA (A:)
yeltqppsvsvspgqtvnitcsgdtlgdkyvcwyqqkpgqspvlviyqdtkrpsgiperf
sgsnsgdtatltvsgtqamdeadyycqawdsssfvfgtgtkvtvlgqpkanptvtlfpps
seelqankatlvclisdfypgavtvawkadgspvkagvettkpskqsnnkyaassylslt
peqwkshrsyscqvthegstvektvapt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4xnmB (B:)
qvqlqesgpglvkpsgtvsltcavsggsisssywwswvrqppgkglewigeiyhsgntny
npslksrvtisvdksknlfslklssvtaadtavyycarvalfdiltggwfdpwgqgtlvt
vssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavl
qssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvelktpt

    Sequence, based on observed residues (ATOM records): (download) 
    >4xnmB (B:)
qvqlqesgpglvkpsgtvsltcavsggsisssywwswvrqppgkglewigeiyhsgntny
npslksrvtisvdksknlfslklssvtaadtavyycarvalfdiltggwfdpwgqgtlvt
vssastkgpsvfplapstaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglys
lssvvtvpssslgtqtyicnvnhkpsntkvdkrvel

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4xnmH (H:)
qvqlqesgpglvkpsgtvsltcavsggsisssywwswvrqppgkglewigeiyhsgntny
npslksrvtisvdksknlfslklssvtaadtavyycarvalfdiltggwfdpwgqgtlvt
vssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavl
qssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvelktpt

    Sequence, based on observed residues (ATOM records): (download) 
    >4xnmH (H:)
qvqlqesgpglvkpsgtvsltcavsggsisssywwswvrqppgkglewigeiyhsgntny
npslksrvtisvdksknlfslklssvtaadtavyycarvalfdiltggwfdpwgqgtlvt
vssastkgpsvfplapsgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgly
slssvvtvpssslgtqtyicnvnhkpsntkvdkrvel

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4xnmL (L:)
yeltqppsvsvspgqtvnitcsgdtlgdkyvcwyqqkpgqspvlviyqdtkrpsgiperf
sgsnsgdtatltvsgtqamdeadyycqawdsssfvfgtgtkvtvlgqpkanptvtlfpps
seelqankatlvclisdfypgavtvawkadgspvkagvettkpskqsnnkyaassylslt
peqwkshrsyscqvthegstvektvapt