PDB entry 4xkl
View 4xkl on RCSB PDB site
Description: Crystal structure of NDP52 ZF2 in complex with mono-ubiquitin
Class: protein binding/metal binding protein
Keywords: NDP52, ubiquitin, zinc finger, autophagy receptor, complex, PROTEIN BINDING-METAL BINDING PROTEIN complex
Deposited on
2015-01-12, released
2015-11-11
The last revision prior to the SCOPe 2.05 freeze date was dated
2015-11-11, with a file datestamp of
2015-11-06.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.29
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Ubiquitin
Species: Homo sapiens [TaxId:9606]
Gene: UBA52
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d4xkla_ - Chain 'B':
Compound: Calcium-binding and coiled-coil domain-containing protein 2
Species: Homo sapiens [TaxId:9606]
Gene: CALCOCO2, NDP52
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: Ubiquitin
Species: Homo sapiens [TaxId:9606]
Gene: UBA52
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d4xklc_ - Chain 'D':
Compound: Calcium-binding and coiled-coil domain-containing protein 2
Species: Homo sapiens [TaxId:9606]
Gene: CALCOCO2, NDP52
Database cross-references and differences (RAF-indexed):
- Heterogens: GOL, ACT, ZN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4xklA (A:)
gpgsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtl
sdyniqkestlhlvlrlrgg
Sequence, based on observed residues (ATOM records): (download)
>4xklA (A:)
gsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgg
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence, based on SEQRES records: (download)
>4xklC (C:)
gpgsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtl
sdyniqkestlhlvlrlrgg
Sequence, based on observed residues (ATOM records): (download)
>4xklC (C:)
gsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgg
- Chain 'D':
No sequence available.