PDB entry 4xkh

View 4xkh on RCSB PDB site
Description: crystal structure of the airapl tandem uims in complex with a lys48-linked tri-ubiquitin
Class: ubiquitin-binding protein
Keywords: tandem ubiquitin-interacting motifs, ubiquitin-binding, ubiquitin-binding protein
Deposited on 2015-01-11, released 2016-02-17
The last revision prior to the SCOPe 2.06 freeze date was dated 2016-03-09, with a file datestamp of 2016-03-04.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Polyubiquitin-C
    Species: Bos taurus [TaxId:9913]
    Gene: UBC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4xkha_
  • Chain 'B':
    Compound: Polyubiquitin-C
    Species: Bos taurus [TaxId:9913]
    Gene: UBC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4xkhb_
  • Chain 'C':
    Compound: AN1-type zinc finger protein 2B
    Species: Mus musculus [TaxId:10090]
    Gene: Zfand2b, Airapl
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Polyubiquitin-C
    Species: Bos taurus [TaxId:9913]
    Gene: UBC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4xkhd_
  • Chain 'E':
    Compound: AN1-type zinc finger protein 2B
    Species: Mus musculus [TaxId:10090]
    Gene: Zfand2b, Airapl
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Polyubiquitin-C
    Species: Bos taurus [TaxId:9913]
    Gene: UBC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4xkhf_
  • Chain 'G':
    Compound: Polyubiquitin-C
    Species: Bos taurus [TaxId:9913]
    Gene: UBC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4xkhg_
  • Chain 'H':
    Compound: AN1-type zinc finger protein 2B
    Species: Mus musculus [TaxId:10090]
    Gene: Zfand2b, Airapl
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Polyubiquitin-C
    Species: Bos taurus [TaxId:9913]
    Gene: UBC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4xkhi_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4xkhA (A:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >4xkhA (A:)
    qifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyni
    qkestlhlvlrl
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4xkhB (B:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >4xkhB (B:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlr
    

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >4xkhD (D:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >4xkhD (D:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrl
    

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >4xkhF (F:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >4xkhF (F:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrl
    

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download)
    >4xkhG (G:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >4xkhI (I:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >4xkhI (I:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrl