PDB entry 4x7c

View 4x7c on RCSB PDB site
Description: Crystal structure of Saga-2006 GII.4 P domain in complex with Nano-85
Class: viral protein
Keywords: Nanobody, VHH domain, Norovirus, Protruding domain, viral protein
Deposited on 2014-12-09, released 2014-12-31
The last revision prior to the SCOPe 2.05 freeze date was dated 2015-03-04, with a file datestamp of 2015-02-27.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vp1
    Species: Norovirus Hu/GII-4/Saga1/2006/JP [TaxId:546980]
    Database cross-references and differences (RAF-indexed):
    • Uniprot B5BTR4 (1-306)
      • expression tag (0)
  • Chain 'B':
    Compound: vp1
    Species: Norovirus Hu/GII-4/Saga1/2006/JP [TaxId:546980]
    Database cross-references and differences (RAF-indexed):
    • Uniprot B5BTR4 (1-306)
      • expression tag (0)
  • Chain 'C':
    Compound: Nano-85 Nanobody
    Species: Vicugna pacos [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 4X7C (0-End)
    Domains in SCOPe 2.05: d4x7cc_
  • Chain 'D':
    Compound: Nano-85 Nanobody
    Species: Vicugna pacos [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 4X7C (0-End)
    Domains in SCOPe 2.05: d4x7cd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >4x7cC (C:)
    dvqlvesggglvqpggslrlscaasgsifsiyamgwyrqapgkqrelvasissgggtnya
    dsvkgrftisgdnakntvylqmnslkpedtavyyckredysayappsgsrgrgtqvtvss
    hhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >4x7cC (C:)
    dvqlvesggglvqpggslrlscaasgsifsiyamgwyrqapgkqrelvasissgggtnya
    dsvkgrftisgkntvylqmnslkpedtavyyckredysayappsgsrgrgtqvtvs
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >4x7cD (D:)
    dvqlvesggglvqpggslrlscaasgsifsiyamgwyrqapgkqrelvasissgggtnya
    dsvkgrftisgdnakntvylqmnslkpedtavyyckredysayappsgsrgrgtqvtvss
    hhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >4x7cD (D:)
    dvqlvesggglvqpggslrlscaasgsifsiyamgwyrqapgkqrelvasissgggtnya
    dsvkgrftisgdnakntvylqmnslkpedtavyyckredysayappsgsrgrgtqvtvss