PDB entry 4x6f
View 4x6f on RCSB PDB site
Description: CD1a binary complex with sphingomyelin
Class: immune system
Keywords: CD1a, Immune complex, Lipid antigen, TCR
Deposited on
2014-12-08, released
2015-02-04
The last revision prior to the SCOPe 2.06 freeze date was dated
2015-03-04, with a file datestamp of
2015-02-27.
Experiment type: XRAY
Resolution: 1.91 Å
R-factor: N/A
AEROSPACI score: 0.33
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: T-cell surface glycoprotein CD1a
Species: Homo sapiens [TaxId:9606]
Gene: CD1A
Database cross-references and differences (RAF-indexed):
- Uniprot P06126 (Start-274)
- natural variant (9)
- natural variant (47)
- expression tag (275-278)
Domains in SCOPe 2.06: d4x6fa1, d4x6fa2, d4x6fa3 - Chain 'B':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Gene: B2M, CDABP0092, HDCMA22P
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4x6fb_ - Heterogens: 3XU, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4x6fA (A:)
lkeplsfhviwiasfynhswkqnlvsgwlsdlqthtwdsnsstivflwpwsrgnfsneew
keletlfrirtirsfegirryahelqfeypfeiqvtggcelhsgkvsgsflqlayqgsdf
vsfqnnswlpypvagnmakhfckvlnqnqhendithnllsdtcprfilglldagkahlqr
qvkpeawlshgpspgpghlqlvchvsgfypkpvwvmwmrgeqeqqgtqrgdilpsadgtw
ylratlevaageaadlscrvkhsslegqdivlywegslvpr
Sequence, based on observed residues (ATOM records): (download)
>4x6fA (A:)
sfhviwiasfykqnlvsgwlsdlqthtwdsnsstivflwpwsrgnfsneewkeletlfri
rtirsfegirryahelqfeypfeiqvtggcegsflqlayqgsdfvsfqnnswlpypvagn
makhfckvlnqnqhendithnllsdtcprfilglldagkahlqrqvkpeawlshgpspgp
ghlqlvchvsgfypkpvwvmwmrgeqeqqgtqrgdilpsadgtwylratlevaageaadl
scrvkhsslegqdivlywegslv
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4x6fB (B:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdmgslvpr
Sequence, based on observed residues (ATOM records): (download)
>4x6fB (B:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrd