PDB entry 4x6e

View 4x6e on RCSB PDB site
Description: CD1a binary complex with lysophosphatidylcholine
Class: immune system
Keywords: CD1a, Immune complex, Lipid antigen, TCR, IMMUNE SYSTEM
Deposited on 2014-12-08, released 2015-01-28
The last revision prior to the SCOPe 2.06 freeze date was dated 2015-03-04, with a file datestamp of 2015-02-27.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: T-cell surface glycoprotein CD1a
    Species: Homo sapiens [TaxId:9606]
    Gene: CD1A
    Database cross-references and differences (RAF-indexed):
    • Uniprot P06126 (Start-274)
      • variant (9)
      • variant (47)
      • expression tag (275-280)
    Domains in SCOPe 2.06: d4x6ea1, d4x6ea2, d4x6ea3
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4x6eb_
  • Heterogens: MLT, 42H, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4x6eA (A:)
    lkeplsfhviwiasfynhswkqnlvsgwlsdlqthtwdsnsstivflwpwsrgnfsneew
    keletlfrirtirsfegirryahelqfeypfeiqvtggcelhsgkvsgsflqlayqgsdf
    vsfqnnswlpypvagnmakhfckvlnqnqhendithnllsdtcprfilglldagkahlqr
    qvkpeawlshgpspgpghlqlvchvsgfypkpvwvmwmrgeqeqqgtqrgdilpsadgtw
    ylratlevaageaadlscrvkhsslegqdivlywegslvpr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4x6eA (A:)
    plsfhviwiasfkqnlvsgwlsdlqthtwdsnsstivflwpwsrgnfsneewkeletlfr
    irtirsfegirryahelqfeypfeiqvtggcegsflqlayqgsdfvsfqnnswlpypvag
    nmakhfckvlnqnqhendithnllsdtcprfilglldagkahlqrqvkpeawlshgpspg
    pghlqlvchvsgfypkpvwvmwmrgeqeqqgtqrgdilpsadgtwylratlevaageaad
    lscrvkhsslegqdivlywegslvpr
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4x6eB (B:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdmgslvpr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4x6eB (B:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm