PDB entry 4x15

View 4x15 on RCSB PDB site
Description: JC Mad-1 polyomavirus VP1 in complex with GM2 oligosaccharide
Class: viral protein
Keywords: beta-sandwich, jelly-roll, viral major capsid protein, glycan, viral protein
Deposited on 2014-11-24, released 2015-04-22
The last revision prior to the SCOPe 2.07 freeze date was dated 2015-05-27, with a file datestamp of 2015-05-22.
Experiment type: XRAY
Resolution: 2.11 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Major capsid protein VP1
    Species: JC polyomavirus [TaxId:10632]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4x15a_
  • Chain 'B':
    Compound: Major capsid protein VP1
    Species: JC polyomavirus [TaxId:10632]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4x15b_
  • Chain 'C':
    Compound: Major capsid protein VP1
    Species: JC polyomavirus [TaxId:10632]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4x15c_
  • Chain 'D':
    Compound: Major capsid protein VP1
    Species: JC polyomavirus [TaxId:10632]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4x15d_
  • Chain 'E':
    Compound: Major capsid protein VP1
    Species: JC polyomavirus [TaxId:10632]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4x15e_
  • Heterogens: GOL, EDO, K, SIA, GAL, NGA, BGC, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4x15A (A:)
    gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdml
    pcysvariplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvq
    gtsfhffsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypv
    ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
    vcgmftnrsgsqqwrglsryfkvqlrkrrvkn
    

    Sequence, based on observed residues (ATOM records): (download)
    >4x15A (A:)
    vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysva
    riplpnlilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggeal
    elqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnentr
    yfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqqw
    rglsryfkvqlrkrrvk
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4x15B (B:)
    gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdml
    pcysvariplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvq
    gtsfhffsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypv
    ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
    vcgmftnrsgsqqwrglsryfkvqlrkrrvkn
    

    Sequence, based on observed residues (ATOM records): (download)
    >4x15B (B:)
    vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysva
    riplpnlilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggeal
    elqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnentr
    yfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqqw
    rglsryfkvqlrkrrvk
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >4x15C (C:)
    gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdml
    pcysvariplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvq
    gtsfhffsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypv
    ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
    vcgmftnrsgsqqwrglsryfkvqlrkrrvkn
    

    Sequence, based on observed residues (ATOM records): (download)
    >4x15C (C:)
    evlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysvar
    iplpnlilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggeale
    lqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnentry
    fgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqqwr
    glsryfkvqlrkrrvk
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >4x15D (D:)
    gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdml
    pcysvariplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvq
    gtsfhffsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypv
    ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
    vcgmftnrsgsqqwrglsryfkvqlrkrrvkn
    

    Sequence, based on observed residues (ATOM records): (download)
    >4x15D (D:)
    evlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysvar
    iplpnlilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggeale
    lqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnentry
    fgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqqwr
    glsryfkvqlrkrrvk
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >4x15E (E:)
    gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdml
    pcysvariplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvq
    gtsfhffsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypv
    ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
    vcgmftnrsgsqqwrglsryfkvqlrkrrvkn
    

    Sequence, based on observed residues (ATOM records): (download)
    >4x15E (E:)
    vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysva
    riplpnlnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggea
    lelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnent
    ryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqq
    wrglsryfkvqlrkrrvk