PDB entry 4x12

View 4x12 on RCSB PDB site
Description: JC Polyomavirus genotype 3 VP1 in complex with GD1b oligosaccharide
Class: viral protein
Keywords: beta-sandwich, jelly-roll, viral major capsid protein, glycan, viral protein
Deposited on 2014-11-24, released 2015-04-22
The last revision prior to the SCOPe 2.07 freeze date was dated 2015-05-27, with a file datestamp of 2015-05-22.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Major capsid protein
    Species: JC polyomavirus type 3 [TaxId:804310]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4x12a_
  • Chain 'B':
    Compound: Major capsid protein
    Species: JC polyomavirus type 3 [TaxId:804310]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4x12b_
  • Chain 'C':
    Compound: Major capsid protein
    Species: JC polyomavirus type 3 [TaxId:804310]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4x12c_
  • Chain 'D':
    Compound: Major capsid protein
    Species: JC polyomavirus type 3 [TaxId:804310]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4x12d_
  • Chain 'E':
    Compound: Major capsid protein
    Species: JC polyomavirus type 3 [TaxId:804310]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4x12e_
  • Heterogens: SIA, GOL, EDO, K, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4x12A (A:)
    gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnkdml
    pcysvariplpnlnedltcgnilmweavtlktevigvttlmnvhsngqathdngaakpvq
    gtsfhffsvggealelqgvvfnyrttypdgtifpknatvqsqvmntehkayldknkaypv
    ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
    vcgmftnrsgsqqwrglsryfkvqlrkrrvkn
    

    Sequence, based on observed residues (ATOM records): (download)
    >4x12A (A:)
    vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnkdmlpcysva
    riplpnlilmweavtlktevigvttlmnvhsngqathdngaakpvqgtsfhffsvggeal
    elqgvvfnyrttypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnentr
    yfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqqw
    rglsryfkvqlrkrrvk
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4x12B (B:)
    gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnkdml
    pcysvariplpnlnedltcgnilmweavtlktevigvttlmnvhsngqathdngaakpvq
    gtsfhffsvggealelqgvvfnyrttypdgtifpknatvqsqvmntehkayldknkaypv
    ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
    vcgmftnrsgsqqwrglsryfkvqlrkrrvkn
    

    Sequence, based on observed residues (ATOM records): (download)
    >4x12B (B:)
    vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnkdmlpcysva
    riplpnlilmweavtlktevigvttlmnvhsngqathdngaakpvqgtsfhffsvggeal
    elqgvvfnyrttypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnentr
    yfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqqw
    rglsryfkvqlrkrrvk
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >4x12C (C:)
    gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnkdml
    pcysvariplpnlnedltcgnilmweavtlktevigvttlmnvhsngqathdngaakpvq
    gtsfhffsvggealelqgvvfnyrttypdgtifpknatvqsqvmntehkayldknkaypv
    ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
    vcgmftnrsgsqqwrglsryfkvqlrkrrvkn
    

    Sequence, based on observed residues (ATOM records): (download)
    >4x12C (C:)
    evlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnkdmlpcysvar
    iplpnlnilmweavtlktevigvttlmnvhsngqathdngaakpvqgtsfhffsvggeal
    elqgvvfnyrttypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnentr
    yfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqqw
    rglsryfkvqlrkrrvk
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >4x12D (D:)
    gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnkdml
    pcysvariplpnlnedltcgnilmweavtlktevigvttlmnvhsngqathdngaakpvq
    gtsfhffsvggealelqgvvfnyrttypdgtifpknatvqsqvmntehkayldknkaypv
    ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
    vcgmftnrsgsqqwrglsryfkvqlrkrrvkn
    

    Sequence, based on observed residues (ATOM records): (download)
    >4x12D (D:)
    vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnkdmlpcysva
    riplpnlnilmweavtlktevigvttlmnvhsngqathdngaakpvqgtsfhffsvggea
    lelqgvvfnyrttypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnent
    ryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqq
    wrglsryfkvqlrkrrvk
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >4x12E (E:)
    gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnkdml
    pcysvariplpnlnedltcgnilmweavtlktevigvttlmnvhsngqathdngaakpvq
    gtsfhffsvggealelqgvvfnyrttypdgtifpknatvqsqvmntehkayldknkaypv
    ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
    vcgmftnrsgsqqwrglsryfkvqlrkrrvkn
    

    Sequence, based on observed residues (ATOM records): (download)
    >4x12E (E:)
    vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnkdmlpcysva
    riplpnlnilmweavtlktevigvttlmnvhsngqathdngaakpvqgtsfhffsvggea
    lelqgvvfnyrttypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnent
    ryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqq
    wrglsryfkvqlrkrrvk