PDB entry 4x0z

View 4x0z on RCSB PDB site
Description: JC Polyomavirus genotype 3 VP1 in complex with GM1 oligosaccharide
Class: viral protein
Keywords: beta-sandwich, jelly-roll, viral capsid protein, glycan, viral protein
Deposited on 2014-11-24, released 2015-04-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Major capsid protein
    Species: JC polyomavirus type 3 [TaxId:804310]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4x0za_
  • Chain 'B':
    Compound: Major capsid protein
    Species: JC polyomavirus type 3 [TaxId:804310]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4x0zb_
  • Chain 'C':
    Compound: Major capsid protein
    Species: JC polyomavirus type 3 [TaxId:804310]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4x0zc_
  • Chain 'D':
    Compound: Major capsid protein
    Species: JC polyomavirus type 3 [TaxId:804310]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4x0zd_
  • Chain 'E':
    Compound: Major capsid protein
    Species: JC polyomavirus type 3 [TaxId:804310]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4x0ze_
  • Heterogens: GOL, EDO, K, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4x0zA (A:)
gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnkdml
pcysvariplpnlnedltcgnilmweavtlktevigvttlmnvhsngqathdngaakpvq
gtsfhffsvggealelqgvvfnyrttypdgtifpknatvqsqvmntehkayldknkaypv
ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
vcgmftnrsgsqqwrglsryfkvqlrkrrvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >4x0zA (A:)
vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnkdmlpcysva
riplpnlnilmweavtlktevigvttlmnvhsngqathdngaakpvqgtsfhffsvggea
lelqgvvfnyrttypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnent
ryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqq
wrglsryfkvqlrkrrvk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4x0zB (B:)
gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnkdml
pcysvariplpnlnedltcgnilmweavtlktevigvttlmnvhsngqathdngaakpvq
gtsfhffsvggealelqgvvfnyrttypdgtifpknatvqsqvmntehkayldknkaypv
ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
vcgmftnrsgsqqwrglsryfkvqlrkrrvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >4x0zB (B:)
vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnkdmlpcysva
riplpnlilmweavtlktevigvttlmnvhsngqathdngaakpvqgtsfhffsvggeal
elqgvvfnyrttypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnentr
yfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqqw
rglsryfkvqlrkrrvk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4x0zC (C:)
gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnkdml
pcysvariplpnlnedltcgnilmweavtlktevigvttlmnvhsngqathdngaakpvq
gtsfhffsvggealelqgvvfnyrttypdgtifpknatvqsqvmntehkayldknkaypv
ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
vcgmftnrsgsqqwrglsryfkvqlrkrrvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >4x0zC (C:)
evlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnkdmlpcysvar
iplpnlilmweavtlktevigvttlmnvhsngqathdngaakpvqgtsfhffsvggeale
lqgvvfnyrttypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnentry
fgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqqwr
glsryfkvqlrkrrvk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4x0zD (D:)
gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnkdml
pcysvariplpnlnedltcgnilmweavtlktevigvttlmnvhsngqathdngaakpvq
gtsfhffsvggealelqgvvfnyrttypdgtifpknatvqsqvmntehkayldknkaypv
ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
vcgmftnrsgsqqwrglsryfkvqlrkrrvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >4x0zD (D:)
vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnkdmlpcysva
riplpnlilmweavtlktevigvttlmnvhsngqathdngaakpvqgtsfhffsvggeal
elqgvvfnyrttypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnentr
yfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqqw
rglsryfkvqlrkrrvk

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4x0zE (E:)
gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnkdml
pcysvariplpnlnedltcgnilmweavtlktevigvttlmnvhsngqathdngaakpvq
gtsfhffsvggealelqgvvfnyrttypdgtifpknatvqsqvmntehkayldknkaypv
ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
vcgmftnrsgsqqwrglsryfkvqlrkrrvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >4x0zE (E:)
vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnkdmlpcysva
riplpnlnilmweavtlktevigvttlmnvhsngqathdngaakpvqgtsfhffsvggea
lelqgvvfnyrttypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnent
ryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqq
wrglsryfkvqlrkrrvk